Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F09E5.2
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Query: F09E5.2 CE02609 AHPC\/TSA protein status:Partially_confirmed TR:Q19265 protein_id:AAA79342.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
AhpC-TSA AhpC/TSA family 290.1 2.8e-83 1
Glycos_transf_1 Glycosyl transferases group 1 185.7 7.6e-52 1
PWI PWI domain 5.9 1.5 1
cdc48_2 Cell division protein 48 (CDC48), dom 5.9 4.2 1
TAP_C TAP C-terminal domain 5.8 3.3 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
TAP_C 1/1 227 245 .. 46 66 .] 5.8 3.3
cdc48_2 1/1 318 354 .. 65 110 .] 5.9 4.2
PWI 1/1 341 371 .. 54 84 .] 5.9 1.5
Glycos_transf_1 1/1 195 378 .. 1 191 [] 185.7 7.6e-52
AhpC-TSA 1/1 387 536 .. 1 161 [] 290.1 2.8e-83
Alignments of top-scoring domains:
TAP_C: domain 1 of 1, from 227 to 245: score 5.8, E = 3.3
*->AaqaFteLksenkIPaEAFkq<-*
A+ aF++Lks Pa F+q
F09E5.2 227 ALDAFEKLKSN--LPADEFSQ 245
cdc48_2: domain 1 of 1, from 318 to 354: score 5.9, E = 4.2
*->dikllglqvltlvvVdtqtkdlpagvvvvtenTtveilekPvsvvF<
++++lg ++ +V+t+ g++++ +n++ + l ++ + F
F09E5.2 318 EAMYLG---TPVIAVNTG------GPCESVRNNETGFLVDQTAEAF 354
-*
F09E5.2 - -
PWI: domain 1 of 1, from 341 to 371: score 5.9, E = 1.5
*->NltgfildeeAeeFVgkLWeLLIeeeksreg<-*
N tgf+ d Ae F +k+ L ee r+
F09E5.2 341 NETGFLVDQTAEAFAEKMIDLMKDEEMYRRM 371
Glycos_transf_1: domain 1 of 1, from 195 to 378: score 185.7, E = 7.6e-52
*->dreeirkklgikedkkiilfvGRlvpeKGidllieAfkkLkkkpkll
+ ++++ ++ ++++k+++ + R++++K+i l+++Af+kLk++ l+
F09E5.2 195 EASDDFGEEIPRGTKYVFTSLNRFERKKNIVLALDAFEKLKSN--LP 239
.klnpnlkLvivGgpYds...edgeeedelkklaeklglednviflGfvp
+++++ +Lvi+Gg Yd +++e+ e +del ++ +kl+l + i++ ++p
F09E5.2 240 aDEFSQCHLVIAGG-YDLknpENIEHYDELVEHMKKLELPADQIVFLHSP 288
.dedlpelyksadvfvlPSryEgFGivllEAmAcGlPVIatncvgGipEv
+d++ +l++++ +++++ +E+FGiv++EAm+ G+PVIa n +gG++E
F09E5.2 289 sDTQKVNLIRRSRAVLYTPDREHFGIVPVEAMYLGTPVIAVN-TGGPCES 337
vkdgetGllvepgqdpealaeaiekllkdeekkdllelrkrlgenarkr<
v+++etG+lv+++ +ea+ae+++ l+kde e+++r++e++ k+
F09E5.2 338 VRNNETGFLVDQT--AEAFAEKMIDLMKDE------EMYRRMSEEGPKW 378
-*
F09E5.2 - -
AhpC-TSA: domain 1 of 1, from 387 to 536: score 290.1, E = 2.8e-83
*->vGkkAPdFsltavvgeefkeitlkDfkGKkwvVLfFyPlDFTpVCpT
+Gk+AP+F+ avv++ef +++l+D+kGK +vVLfFyPlDFT+VCpT
F09E5.2 387 IGKPAPQFKTQAVVDGEFVDVSLSDYKGK-YVVLFFYPLDFTFVCPT 432
EliafsdlapEFkklgvedVLgvSvDspfsHkaWikdereegglgklnyp
E+iafsd+a+EFk +++ VL+ S+Ds+fsH+aWi+++r+ gglg +n+p
F09E5.2 433 EIIAFSDRAEEFKAINTV-VLAASTDSVFSHLAWINQPRKHGGLGEMNIP 481
llsDWpnreisrayGvldekeeeGialRliaRglFiIDgpdgiirysevn
l+D +n++isr+yGvl+e +eGia+R glFiID p+ ++r++++
F09E5.2 482 VLAD-TNHQISRDYGVLKE--DEGIAFR----GLFIID-PSQNLRQITI- 522
ndevggrnadeilr<-*
nd+++gr++de lr
F09E5.2 523 NDLPVGRSVDETLR 536