Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F09F3.5
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Query: F09F3.5 CE20661 peroxidase like status:Partially_confirmed TR:P90820 protein_id:CAB02910.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
An_peroxidase Animal haem peroxidase 937.5 3.5e-278 1
ZF-HD_dimer ZF-HD protein dimerisation region 6.3 2.6 1
HAP1_N HAP1 N-terminal conserved region 3.1 10 1
DFNA5 DFNA5 protein 2.9 4.7 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DFNA5 1/1 74 85 .. 1 12 [. 2.9 4.7
ZF-HD_dimer 1/1 245 263 .. 28 48 .. 6.3 2.6
HAP1_N 1/1 664 675 .. 325 336 .] 3.1 10
An_peroxidase 1/1 156 689 .. 1 596 [] 937.5 3.5e-278
Alignments of top-scoring domains:
DFNA5: domain 1 of 1, from 74 to 85: score 2.9, E = 4.7
*->mFEkvtRnvvKE<-*
++E++tR++v+E
F09F3.5 74 VLEEATRILVRE 85
ZF-HD_dimer: domain 1 of 1, from 245 to 263: score 6.3, E = 2.6
*->FmpsgeegtldpsaLkCaACg<-*
Fmps+ + aL C+AC+
F09F3.5 245 FMPSSVARDGG--ALDCSACN 263
HAP1_N: domain 1 of 1, from 664 to 675: score 3.1, E = 10
*->aQeelKklRsrS<-*
+Qee+ +lR+++
F09F3.5 664 TQEEISELRNKT 675
An_peroxidase: domain 1 of 1, from 156 to 689: score 937.5, E = 3.5e-278
*->rYRtlDGtCNNlenPtwGaanspfrRll.pPsYdDGidaPRsrsvdg
+R+++G+CNN++n+++G+++sp+rR+l+ +sY+DG++ +R+rsv+g
F09F3.5 156 SIRSITGLCNNRQNSDLGNSVSPLRRILgAASYADGLGRIRTRSVNG 202
spLPsaRvvSrkllsdrdfpipdpkfgtTlmvmqfGQFmaHDitktssst
++LPsaR++S+++++dr++++++p+ ++++m +GQF+aHD ++++ss
F09F3.5 203 GELPSARLISNRIHDDRNNQVFSPSI--NHLHMIIGQFIAHDVVFMPSSV 250
sPiEengealeCckcdspvspqlshpeCfPIpvppdDPffgqlgvrClpF
+ ++g al+C++c+sp q+++p+C+PI +p++DP+f+ + C++
F09F3.5 251 A---RDGGALDCSACNSP---QRVSPNCAPITIPRNDPYFN---TPCMRL 291
vRSlpaprtgpqcrlGgpReQlNqaTayiDaSpiYGssaeearklRaFqg
+R+l++ q+++ g+R Q+ q+++++D+Sp+YGs ++ea ++R+Fq
F09F3.5 292 TRALNG-----QENF-GVRSQIGQNSHFLDLSPVYGSADCEAETVRSFQE 335
GlLktspdnggpvrlgrdllPldentqdcgsCvyprsaagsgCfiaGDdR
G+++t++d g ++l+P++ n d+ +C+ s+a+ +Cf++GD+R
F09F3.5 336 GKMLTFDDL-G-----YTLPPQNAN--DS-NCQ---SSAPFHCFTCGDFR 373
vnlqpgLaaLHtLflREHNRiAdaLkalNPhWdDErlFQEARkIviAqmQ
++l+p+L+++Ht++++EHNR+A++++ + P ++DE++FQ +RkI+i+++Q
F09F3.5 374 NSLHPALIPVHTILIKEHNRLAEQVRVARPRFNDEQIFQLVRKIMIGMWQ 423
hItynEyLPilLGrelmkkMrANWyGLLGfgLvygplksGyVgyyngYdp
hI+ynEy P++L+r ++++ f L+ pl++G+ + gY++
F09F3.5 424 HIVYNEYIPKYLPRRTIRN----------FALR--PLRNGV---HRGYST 458
nvQYnpsianEFatAAFRfGHslipgkfplvdendkiyfgkpisnlsgsv
+v +psi++EFa+AAFRfGHs+ + +fp+++en g+p++n +
F09F3.5 459 SV--DPSISAEFAGAAFRFGHSQSRFDFPRLTEN-----GRPAGN----Y 497
rLsdlffnpselylilaeggvdqllrGlatqpaGrmLnrvDrfitdevtn
+L++++f+++++yl + gg+++++ G+ ++pa m ++Dr+++++++n
F09F3.5 498 DLGNDIFYADQMYL-TRIGGWEPVMNGMVRMPA--M--KSDRYFSFGIRN 542
kLFgtrgeppfglDLasinIqRGRDhGlpsYNeyRefCGLpratsFeDLt
++F++rg++++g+DL+sinIqRGRD+Gl +Y +yR+++GLp++tsF++L+
F09F3.5 543 QMFEIRGRNGSGVDLVSINIQRGRDMGLFPYIQYRQLVGLPTVTSFNELN 592
dlispdeenlarLkslYendvdDvDLyVGgllEkpvpGglvGpTfaCIia
+++s+ en+++L+ +Y d++D+DLyVG++lE p+ Gg++GpT++++i+
F09F3.5 593 TTFSQ--ENIQALRNVYS-DPADIDLYVGIMLEEPLSGGQLGPTASFMIG 639
eQFqRlrrGDRFwYEngrgkpsgFTpeVQLaeiR.KtsLarliCdNtdvl
eQF++l+rGDRF+YE ++++ FT+e +++e+R+KtsLa++iC N+d+
F09F3.5 640 EQFRALKRGDRFFYESIAEGTDNFTQE-EISELRnKTSLAKIICTNMDFA 688
t<-*
+
F09F3.5 689 A 689