Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm2/seq/F09F3.5
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Query:  F09F3.5  CE20661   peroxidase like status:Partially_confirmed TR:P90820 protein_id:CAB02910.1

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N
--------      -----------                               -----    ------- ---
An_peroxidase Animal haem peroxidase                    937.5   3.5e-278   1
ZF-HD_dimer   ZF-HD protein dimerisation region           6.3        2.6   1
HAP1_N        HAP1 N-terminal conserved region            3.1         10   1
DFNA5         DFNA5 protein                               2.9        4.7   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
DFNA5           1/1      74    85 ..     1    12 [.     2.9      4.7
ZF-HD_dimer     1/1     245   263 ..    28    48 ..     6.3      2.6
HAP1_N          1/1     664   675 ..   325   336 .]     3.1       10
An_peroxidase   1/1     156   689 ..     1   596 []   937.5 3.5e-278

Alignments of top-scoring domains:
DFNA5: domain 1 of 1, from 74 to 85: score 2.9, E = 4.7
                   *->mFEkvtRnvvKE<-*
                      ++E++tR++v+E
     F09F3.5    74    VLEEATRILVRE    85

ZF-HD_dimer: domain 1 of 1, from 245 to 263: score 6.3, E = 2.6
                   *->FmpsgeegtldpsaLkCaACg<-*
                      Fmps+   +    aL C+AC+
     F09F3.5   245    FMPSSVARDGG--ALDCSACN    263

HAP1_N: domain 1 of 1, from 664 to 675: score 3.1, E = 10
                   *->aQeelKklRsrS<-*
                      +Qee+ +lR+++
     F09F3.5   664    TQEEISELRNKT    675

An_peroxidase: domain 1 of 1, from 156 to 689: score 937.5, E = 3.5e-278
                   *->rYRtlDGtCNNlenPtwGaanspfrRll.pPsYdDGidaPRsrsvdg
                       +R+++G+CNN++n+++G+++sp+rR+l+ +sY+DG++ +R+rsv+g
     F09F3.5   156    SIRSITGLCNNRQNSDLGNSVSPLRRILgAASYADGLGRIRTRSVNG 202

                   spLPsaRvvSrkllsdrdfpipdpkfgtTlmvmqfGQFmaHDitktssst
                   ++LPsaR++S+++++dr++++++p+   ++++m +GQF+aHD ++++ss
     F09F3.5   203 GELPSARLISNRIHDDRNNQVFSPSI--NHLHMIIGQFIAHDVVFMPSSV 250

                   sPiEengealeCckcdspvspqlshpeCfPIpvppdDPffgqlgvrClpF
                   +   ++g al+C++c+sp   q+++p+C+PI +p++DP+f+   + C++
     F09F3.5   251 A---RDGGALDCSACNSP---QRVSPNCAPITIPRNDPYFN---TPCMRL 291

                   vRSlpaprtgpqcrlGgpReQlNqaTayiDaSpiYGssaeearklRaFqg
                   +R+l++     q+++ g+R Q+ q+++++D+Sp+YGs ++ea ++R+Fq
     F09F3.5   292 TRALNG-----QENF-GVRSQIGQNSHFLDLSPVYGSADCEAETVRSFQE 335

                   GlLktspdnggpvrlgrdllPldentqdcgsCvyprsaagsgCfiaGDdR
                   G+++t++d  g     ++l+P++ n  d+ +C+   s+a+ +Cf++GD+R
     F09F3.5   336 GKMLTFDDL-G-----YTLPPQNAN--DS-NCQ---SSAPFHCFTCGDFR 373

                   vnlqpgLaaLHtLflREHNRiAdaLkalNPhWdDErlFQEARkIviAqmQ
                   ++l+p+L+++Ht++++EHNR+A++++ + P ++DE++FQ +RkI+i+++Q
     F09F3.5   374 NSLHPALIPVHTILIKEHNRLAEQVRVARPRFNDEQIFQLVRKIMIGMWQ 423

                   hItynEyLPilLGrelmkkMrANWyGLLGfgLvygplksGyVgyyngYdp
                   hI+ynEy P++L+r ++++          f L+  pl++G+   + gY++
     F09F3.5   424 HIVYNEYIPKYLPRRTIRN----------FALR--PLRNGV---HRGYST 458

                   nvQYnpsianEFatAAFRfGHslipgkfplvdendkiyfgkpisnlsgsv
                   +v  +psi++EFa+AAFRfGHs+ + +fp+++en     g+p++n    +
     F09F3.5   459 SV--DPSISAEFAGAAFRFGHSQSRFDFPRLTEN-----GRPAGN----Y 497

                   rLsdlffnpselylilaeggvdqllrGlatqpaGrmLnrvDrfitdevtn
                   +L++++f+++++yl  + gg+++++ G+ ++pa  m  ++Dr+++++++n
     F09F3.5   498 DLGNDIFYADQMYL-TRIGGWEPVMNGMVRMPA--M--KSDRYFSFGIRN 542

                   kLFgtrgeppfglDLasinIqRGRDhGlpsYNeyRefCGLpratsFeDLt
                   ++F++rg++++g+DL+sinIqRGRD+Gl +Y +yR+++GLp++tsF++L+
     F09F3.5   543 QMFEIRGRNGSGVDLVSINIQRGRDMGLFPYIQYRQLVGLPTVTSFNELN 592

                   dlispdeenlarLkslYendvdDvDLyVGgllEkpvpGglvGpTfaCIia
                   +++s+  en+++L+ +Y  d++D+DLyVG++lE p+ Gg++GpT++++i+
     F09F3.5   593 TTFSQ--ENIQALRNVYS-DPADIDLYVGIMLEEPLSGGQLGPTASFMIG 639

                   eQFqRlrrGDRFwYEngrgkpsgFTpeVQLaeiR.KtsLarliCdNtdvl
                   eQF++l+rGDRF+YE  ++++  FT+e +++e+R+KtsLa++iC N+d+
     F09F3.5   640 EQFRALKRGDRFFYESIAEGTDNFTQE-EISELRnKTSLAKIICTNMDFA 688

                   t<-*
                   +
     F09F3.5   689 A    689



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