Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F09G2.1
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Query: F09G2.1 CE30744 tyrosine protein kinase status:Partially_confirmed TR:O17408 protein_id:AAB71320.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
pkinase Protein kinase domain 197.0 3e-55 1
Brevenin Brevenin/esculentin/gaegurin/rugosin family 4.2 8.3 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Brevenin 1/1 9 25 .. 7 23 .. 4.2 8.3
pkinase 1/1 529 813 .. 1 294 [] 197.0 3e-55
Alignments of top-scoring domains:
Brevenin: domain 1 of 1, from 9 to 25: score 4.2, E = 8.3
*->LLLvLFLGlVSLSlCEE<-*
LLL+L L +VSL lC++
F09G2.1 9 LLLLLHLCTVSLVLCDQ 25
pkinase: domain 1 of 1, from 529 to 813: score 197.0, E = 3e-55
*->yelleklGeGsfGkVykakhkd...............ktgkiVAvKi
++ eklG G++G+V+k+k + ++ ++ ++ + ++t++ AvK+
F09G2.1 529 VVKNEKLGHGAYGHVFKGKIVGvppaiekynraealdYTDCDCAVKM 575
lkk..ekesikekrflrEiqilkrLs.HpNIvrligvfedtddhlylvmE
l+k ++ ++e f+ Ei+++k+L +++v+++g + + + +lv+E
F09G2.1 576 LPKyaTDAAKQE--FRHEIELMKNLGfNEHLVNMLGCIT-VSAKSCLVLE 622
ymegGdLfdylrrng...........gplsekeakkialQilrGleYLHs
++ + dL++y+++++ + + +++ +++ s ke +++a+Qi +G+ +L +
F09G2.1 623 HCCHRDLLRYVKNKKcdleisrsvddTIDSHKEFLNFAWQITQGMRFLVD 672
ngivHRDLKpeNILlden..dgtvKiaDFGLArlle..sssklttfvGTp
++i+HRDL+++NIL++e+ + K++DFGLA l e++ ++ t+ p
F09G2.1 673 KRIIHRDLAARNILITEQcgMKSAKVSDFGLAILSEpsENGEVTGSDRLP 722
wYmmAPEvilegrgysskvDvWSlGviLyElltggplfpgadlpaftggd
++A E+ le ++s k+DvWS+G++++E+ + g
F09G2.1 723 IKWLALEC-LEKAEFSFKSDVWSFGIVIFEMYSLG--------------- 756
evdqliifvlklPfsdelpktridpleelfriikrpglrlplpsncSeel
+ Pf + el +++k g r+++p + +
F09G2.1 757 ----------DVPFAE-------IEPTELIAHLKS-GARPKFPLLATDKI 788
kdLlkkcLnkDPskRpGsatakeilnhpwf<-*
+++++c+ ++Rp + e+ ++ f
F09G2.1 789 EEIMSSCWSEKSEERP---DFDEL--SKLF 813