hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm2/seq/F09G8.8
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Query:  F09G8.8  CE23637    status:Partially_confirmed TN:AAK84522 protein_id:AAK84522.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
vwa      von Willebrand factor type A domain            106.8    1.4e-32   2
lectin_c Lectin C-type domain                            17.1     0.0057   1
Ku_N     Ku70/Ku80 N-terminal alpha/beta domain           4.4        4.1   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
vwa        1/2      75    86 ..     1    12 [.     7.8     0.16
Ku_N       1/1     334   345 ..     1    13 [.     4.4      4.1
vwa        2/2     333   515 ..     1   189 []    97.6  1.1e-29
lectin_c   1/1     567   669 ..    19   125 .]    17.1   0.0057

Alignments of top-scoring domains:
vwa: domain 1 of 2, from 75 to 86: score 7.8, E = 0.16
                   *->DivFllDgSgSi<-*
                      Di++++DgS+S+
     F09G8.8    75    DIIIVVDGSSSM    86

Ku_N: domain 1 of 1, from 334 to 345: score 4.4, E = 4.1
                   *->aivFviDaspaMf<-*
                       i+FviD+s+ M+
     F09G8.8   334    -IIFVIDVSEGMG    345

vwa: domain 2 of 2, from 333 to 515: score 97.6, E = 1.1e-29
                   *->DivFllDgSgSigeenrFekvkdfvkklveknld...igpdgtrvgl
                      Di+F++D+S+ +g+ + +  vk  +++lv+ +++ ++  +++++vgl
     F09G8.8   333    DIIFVIDVSEGMGQGG-LMMVKAEINTLVG-QMSldpNIQKHVQVGL 377

                   vqyssdvrtefsLndytskddllaai.....lknlrylgGgTnNtgkALk
                   + ys+ + ++f+  dyt++d+  +++ ++++l ++  +++  n ++++L+
     F09G8.8   378 IKYSDKAEVVFKPSDYTNEDEFTEDLwsdprLEDVDEKSDEVN-LHLGLQ 426

                   yalenlfsstMlkngraagsRpenapkvlillTDGksndgpdve.aaaal
                    a+++  s+           R  +++kv++++   ++++g d+++++aa+
     F09G8.8   427 QAAKMTASM-----------RN-GVRKVIVVYAASYNDEGNDDArQIAAN 464

                   rrk.giivfavGvdadeeeLr.iasepeseghvfyvedfddlwlqlkdlq
                    r++g ++++v++ +  e  +    ++e++++ +++++f+d++l   +++
     F09G8.8   465 IREtGYAIITVAF-VEPESSNlVMKIGEIASPRMNFTSFRDDLLVE-QME 512

                   eal<-*
                   +al
     F09G8.8   513 DAL    515

lectin_c: domain 1 of 1, from 567 to 669: score 17.1, E = 0.0057
                   *->AHLvsIqsaeEqsfvvafltsltkk.......sntyaWIGLtdinte
                      +HLv ++s+  +     fl+++  ++  ++++ n ++ IG  + +
     F09G8.8   567    GHLVYVNSELKN----TFLNQFYMDnwypenqENPNYDIGYYYDQAT 609

                   gtwvwegwetdgspvnytenWapgePnnrgnhGgnEdCve..iytdtdfl
                   ++++w    ++g   n + nWa+g P+ +++     dCv+ ++ +d+ ++
     F09G8.8   610 KKFIW----VNGVTNNPYSNWATGHPDVKQG-----DCVMakLLKDSKND 650

                   aGkWnDepCdskl.pyvCef<-*
                    ++Wn+++C s +++ +C+
     F09G8.8   651 -FRWNSVSCTSEYgRGLCQE    669

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