Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F10B5.7
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Query: F10B5.7 CE02178 locus:rrf-3 status:Partially_confirmed TR:Q19285 protein_id:CAA91312.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
RdRP RNA dependent RNA polymerase 751.7 1.8e-230 1
ACBP Acyl CoA binding protein 5.4 3.9 1
EAV_env_prot Equine arteritis virus small envelope g 4.3 1.3 1
CD36 CD36 family 3.4 4.7 1
UvrD-helicase UvrD/REP helicase 2.3 8.3 1
Hemagglutinin Hemagglutinin 0.7 3.6 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
EAV_env_prot 1/1 40 48 .. 214 222 .] 4.3 1.3
Hemagglutinin 1/1 312 322 .. 309 319 .. 0.7 3.6
CD36 1/1 418 441 .. 544 567 .] 3.4 4.7
RdRP 1/1 851 1243 .. 1 450 [] 751.7 1.8e-230
ACBP 1/1 1329 1344 .. 74 89 .] 5.4 3.9
UvrD-helicase 1/1 1452 1503 .. 601 664 .] 2.3 8.3
Alignments of top-scoring domains:
EAV_env_prot: domain 1 of 1, from 40 to 48: score 4.3, E = 1.3
*->ssGtLPrRK<-*
ssGtLP RK
F10B5.7 40 SSGTLPNRK 48
Hemagglutinin: domain 1 of 1, from 312 to 322: score 0.7, E = 3.6
*->NvskiaiGeCP<-*
N+s+iaiG+CP
F10B5.7 312 NISAIAIGNCP 322
CD36: domain 1 of 1, from 418 to 441: score 3.4, E = 4.7
*->mkdetvntlwlqlvlvprivgviq<-*
m+ et+n++++q+ ++p + ++i+
F10B5.7 418 MSHETTNSIYIQMKNPPHLWEGIP 441
RdRP: domain 1 of 1, from 851 to 1243: score 751.7, E = 1.8e-230
*->eipDiegkpcIhsdGtgYcFsDGvGmiSlnklArkvarklnldrgGs
++pDieg+ ++++YcFsDG+G+iS+ klA++++++l+l
F10B5.7 851 VEPDIEGG-----VENKYCFSDGCGRISI-KLATHISKILQL----- 886
rvkevPsAfQiRygydGyAyKGVlavdpnlddirnWkgrkvqlRpSMiKF
kevP++fQ+R++ G +KG+l++dp++ddi+n ++kv++R+S++KF
F10B5.7 887 --KEVPACFQVRFK--G--FKGILVIDPTIDDIIN--MPKVIFRKSQQKF 928
eadskntlleqlEvvkfsrpspvtLNRqlItlLsqlGVedsvfeemRiTn
+++ + ++e+lEvvk+++pspv+LNR++It+L+q+++++s+++++RiTn
F10B5.7 929 GEGGGELQDEYLEVVKYAMPSPVCLNRPFITILDQVSEKQSASSHRRITN 978
qeellldlnalleskqkaqevlaanklgenyrltidilalmliaGfelsd
+ +++l+++ ++ s++ ++e++aa++l ++++l+id++a++++aGfels
F10B5.7 979 RVHYYLERELCSLSNMLINENQAAEELVNRTNLAIDWNAASKRAGFELSV 1028
EPflrsmLsllrksklreLkeKarIfvPideGrsLlGvvDEtGtLehygq
+P +r+mL+++++++++++++Ka+If+P+++Grs++GvvDEtG L+ ygq
F10B5.7 1029 DPLIRDMLFSIYRYNIIHHISKAKIFLPPSLGRSMYGVVDETGLLQ-YGQ 1077
VfvqvskldiekllpktsnrkksgksklevitGtVlVtKNPcLHPGDVRV
Vf+q+s++++ +tsnr + +++tG+Vl+tKNPc++PGDVRV
F10B5.7 1078 VFIQYSPSIR-----QTSNR-----P--ILKTGKVLITKNPCHVPGDVRV 1115
lkAVdvPaLehyvGNlkdvVvFPQkGpRphpdecSGsDLDGDeYFVIWDq
++AV++PaL+h l+dvVvFPQ+GpRphpde++GsDLDGDeY++IWDq
F10B5.7 1116 FDAVWQPALAH----LVDVVVFPQHGPRPHPDEMAGSDLDGDEYSIIWDQ 1161
kLlpernpeePmlsesekskiyiGrepseldreetdeeliefFvstkYlk
++l+++n ee+m+++s++ ++e+d+e+t+++++efF++ Yl+
F10B5.7 1162 EMLLDYN-EEAMVFPSSS--------AAEEDKEPTTDDMVEFFLR--YLQ 1200
sdslGlIsnAHlaiaDrfltLGDerepekarskkCleLAklhsdAVDfpK
+ds+G++s+AHla+aD ++++++ +C+++A ++++AVDfpK
F10B5.7 1201 QDSIGRMSHAHLAYAD--------LHGLFHE--NCHAIALKCAVAVDFPK 1240
tGv<-*
+Gv
F10B5.7 1241 SGV 1243
ACBP: domain 1 of 1, from 1329 to 1344: score 5.4, E = 3.9
*->mkaYIakVeeLiakya<-*
+ +Y++ + +L+++y+
F10B5.7 1329 RDEYVDRMQQLLDEYG 1344
UvrD-helicase: domain 1 of 1, from 1452 to 1503: score 2.3, E = 8.3
*->efqalkqleeklgiakllkalsaraykklkdflalieelrklllsia
+++al++l + ++++ ++ l + ++ ++l+++i
F10B5.7 1452 AWDALCDLRR--------QLMLDKNDAVL---RGKYPIAARLEEEI- 1486
elslealldevlellgy<-*
e+s+e ++d++l+l ++
F10B5.7 1487 ENSIERQFDKFLKLKDL 1503