hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm2/seq/F10B5.4
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Query:  F10B5.4  CE29091  locus:tub-1 Tub family protein tub-1 status:Partially_confirmed TN:CAB61010 protein_id:CAB61010.2

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
Tub      Tub family                                     544.8   2.2e-230   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Tub        1/1     174   426 .]     1   313 []   544.8 2.2e-230

Alignments of top-scoring domains:
Tub: domain 1 of 1, from 174 to 426: score 544.8, E = 2.2e-230
                   *->PgPrdslvqCfIkRdKsgmdygLYlgLslalee...engkkkFLLAa
                      P+++++l++C I+R+Ksg+d+g++++++l+lee ++++++k+FLLAa
     F10B5.4   174    PAVEHCLYKCSITRQKSGVDKGMFPTYFLHLEEfdtDKRQKIFLLAA 220

                   rkrrRstttnYiISldpddlSRssstYiGKlRSNfLGTKFTvYDngpnpn
                   rkr++stt+nY++S+dp++lSR++++Y++K+RSN LGT+FTvYD+g+np+
     F10B5.4   221 RKRKKSTTANYLLSTDPTNLSREGEGYCAKVRSNALGTQFTVYDSGQNPK 270

                   kaqlvspaqrSRrfsskkVspkvpsgryelAaVsYElNVLGfRGPRrMtv
                   k                  +++++++r+elAaV+YE+NVLGf+GPR+Mt+
     F10B5.4   271 K------------------TTNHAAIRQELAAVIYETNVLGFKGPRKMTI 302

                   impgipasav.epggrvpvqpeellsrssleeSfrsissSDfsSsrfsef
                   +mpgi+  ++++p++r+pv+
     F10B5.4   303 VMPGIEPPTEnRPAVRCPVR------------------------------ 322

                   sgplnedqesllsreqnknkegllvLkNKaPrWheqlqcycLNFhGRVTv
                     p++ d+++ll+r++ ++ ++l +L+NK+P+W++++q+y+LNFhGRVT+
     F10B5.4   323 --PIQ-DKHTLLERYRLNDLDSLKILSNKSPQWNDETQSYVLNFHGRVTQ 369

                   ASVKNFQLvaaadaqaaspsqaeasepdyIiLQFGkVgkDvFTMDYrYPL
                   ASVKNFQ++++             s+p+yI++QFG++++D FTMD+rYPL
     F10B5.4   370 ASVKNFQIIHQ-------------SSPEYIVMQFGRISDDEFTMDFRYPL 406

                   SAfQAFAIcLSSFDtKLACE<-*
                   SA+QAF+I+++SF++KLACE
     F10B5.4   407 SAVQAFGIAMTSFHGKLACE    426

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