Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F10B5.6
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Query: F10B5.6 CE01548 locus:emb-27 cell division control protein status:Confirmed TR:Q09536 protein_id:CAA88313.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
TPR TPR Domain 62.8 3.8e-16 3
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
TPR 1/3 376 409 .. 1 34 [] 0.9 2e+02
TPR 2/3 495 528 .. 1 34 [] 32.8 1.5e-07
TPR 3/3 529 562 .. 1 34 [] 29.2 1.6e-06
Alignments of top-scoring domains:
TPR: domain 1 of 3, from 376 to 409: score 0.9, E = 2e+02
*->aeayynlGnaylklgkydeAieayekALeldPnn<-*
ae + G++++ ++++ +y +A +l ++
F10B5.6 376 AEGWVAFGHILHYEVEHEQSMSCYYRASKLVDKS 409
TPR: domain 2 of 3, from 495 to 528: score 32.8, E = 1.5e-07
*->aeayynlGnaylklgkydeAieayekALeldPnn<-*
++n+G++ +++g+++eAi +y+kA++++P++
F10B5.6 495 HPMLNNIGHIARRQGRLNEAIMFYQKAIRMEPKF 528
TPR: domain 3 of 3, from 529 to 562: score 29.2, E = 1.6e-06
*->aeayynlGnaylklgkydeAieayekALeldPnn<-*
++a +++y lg+ d+A e+++kAL++dP n
F10B5.6 529 VDAIASTALCYAVLGNIDKATEFFNKALAIDPFN 562