Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F10C2.3
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Query: F10C2.3 CE31905 status:Partially_confirmed TR:P90833 protein_id:CAB04082.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
DUF229 Protein of unknown function (DUF229) 686.8 1e-202 1
thiored Thioredoxin 3.8 8.1 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
thiored 1/1 363 374 .. 105 116 .] 3.8 8.1
DUF229 1/1 68 527 .. 1 561 [] 686.8 1e-202
Alignments of top-scoring domains:
thiored: domain 1 of 1, from 363 to 374: score 3.8, E = 8.1
*->ddLvafikkhlg<-*
+dL++f+kkh++
F10C2.3 363 EDLANFLKKHVE 374
DUF229: domain 1 of 1, from 68 to 527: score 686.8, E = 1e-202
*->sifkpnpylkCsketllttktfnitfgylrlnidaelalarlnvesl
+ +++++l+C++++++ + tf +++g+l+ln++a+++ s+
F10C2.3 68 DDGSRPTQLACHDAKVQPELTFLDENGVLQLNSTAVSE-------SS 107
enleCyykreikRkrdsaniygysklfklppkltqsvkvpvgiiegevef
++eC+y r+++++++++++++ys++ +++svk++++ f
F10C2.3 108 LKVECQY-RTYDKMDGDDEQLNYSEWIS----FNMSVKIESE-------F 145
irteCwsdfgkiyrkflqkDvfeflhdeerlriipksgdkrvktekstpk
++++C++++++++ +v++++h+ +iip+s +s+p
F10C2.3 146 VEVSCQRAWFPRT------KVYSNNHN----QIIPIS--------RSQP- 176
esdkpSVlilGlDSlSrmnfrRsMPrTvkflesnlgwvefqGYNKVGDNT
sdk SV+++ lDS+S++nfrR+M++T+++++s +g+++f+G++K+GDN+
F10C2.3 177 VSDKSSVIVIVLDSVSHSNFRRTMNKTLDVMHSLYGSFIFDGMTKIGDNS 226
fpNLlplLtGkllEavkklidsegeaeancdlppskegclDkcpfIWKdF
f N + +++G ++++++++d ++g++D++++IWK++
F10C2.3 227 FSNAVGFFAG------------KWWNTEFGD----AHGYFDDHDLIWKHY 260
kdaYGYaTafAEDwstagigtFnYlpdefkpGFkkqPtDhYlRPlllavE
+++ GY+T++AED+ +g+++FnYl ++GFkk+P+DhY+RP++l+v+
F10C2.3 261 REN-GYRTLYAEDY--PGFNLFNYL----SKGFKKKPVDHYFRPYWLNVY 303
kqlkyrtrsglnlmyClgrrplhevllDylrqFlpryrdspdipfFgFfW
+++ +r++++l C+g ++ h+ +l+yl qF+ +y+d+p F+++W
F10C2.3 304 WTYVHRRSRNL----CYGNHRMHNLQLNYLSQFVSKYKDQP---KFAISW 346
snslsHddfnlasalDedllkyLkkleenGlldntivifmSDHGlRfGkl
+++l Hd++n++++ Dedl+++Lkk++e+ l+n+++++mSDHG+Rf+++
F10C2.3 347 LTELGHDWLNQVRYGDEDLANFLKKHVED--LENSYLFIMSDHGHRFDNI 394
rrtsqGmlEERlPfmsillPpwlRnyekyPqaveNLelNahrLtTpFDlH
r+ts+G+lEERlPf+s++lP++lR k+ ++v++ ++N+++Lt++FD++
F10C2.3 395 RKTSIGRLEERLPFFSVSLPKKLR---KDSKLVDTVRKNSKKLTSFFDVY 441
aTLkhilnlsslsdkellrrtkaldclpsalprgiSLFlPiPdnRtCstA
aT++hiln+s+++d ++ + SLFlPi+d R+C+tA
F10C2.3 442 ATFRHILNNSKQPDVMRGE----------------SLFLPIKD-RNCETA 474
gIpehwCtCesykeiptndtkekalvrriAekvvdriNellkelnteeEl
+Ipe++C+C+ +++++++ + a++r++Ae++ ++iN++l++
F10C2.3 475 HIPEEFCVCDTEVPLNVSAN---AQIRTMAEDFAKDINQRLDP------- 514
ltplCapLeLqkVe<-*
+p+C++L+L++V+
F10C2.3 515 -HPQCVQLYLKNVI 527