Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm2/seq/F10C2.3
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Query:  F10C2.3  CE31905    status:Partially_confirmed TR:P90833 protein_id:CAB04082.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
DUF229   Protein of unknown function (DUF229)           686.8     1e-202   1
thiored  Thioredoxin                                      3.8        8.1   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
thiored    1/1     363   374 ..   105   116 .]     3.8      8.1
DUF229     1/1      68   527 ..     1   561 []   686.8   1e-202

Alignments of top-scoring domains:
thiored: domain 1 of 1, from 363 to 374: score 3.8, E = 8.1
                   *->ddLvafikkhlg<-*
                      +dL++f+kkh++
     F10C2.3   363    EDLANFLKKHVE    374

DUF229: domain 1 of 1, from 68 to 527: score 686.8, E = 1e-202
                   *->sifkpnpylkCsketllttktfnitfgylrlnidaelalarlnvesl
                      +  +++++l+C++++++ + tf +++g+l+ln++a+++       s+
     F10C2.3    68    DDGSRPTQLACHDAKVQPELTFLDENGVLQLNSTAVSE-------SS 107

                   enleCyykreikRkrdsaniygysklfklppkltqsvkvpvgiiegevef
                    ++eC+y r+++++++++++++ys++      +++svk++++       f
     F10C2.3   108 LKVECQY-RTYDKMDGDDEQLNYSEWIS----FNMSVKIESE-------F 145

                   irteCwsdfgkiyrkflqkDvfeflhdeerlriipksgdkrvktekstpk
                   ++++C++++++++      +v++++h+    +iip+s        +s+p
     F10C2.3   146 VEVSCQRAWFPRT------KVYSNNHN----QIIPIS--------RSQP- 176

                   esdkpSVlilGlDSlSrmnfrRsMPrTvkflesnlgwvefqGYNKVGDNT
                    sdk SV+++ lDS+S++nfrR+M++T+++++s +g+++f+G++K+GDN+
     F10C2.3   177 VSDKSSVIVIVLDSVSHSNFRRTMNKTLDVMHSLYGSFIFDGMTKIGDNS 226

                   fpNLlplLtGkllEavkklidsegeaeancdlppskegclDkcpfIWKdF
                   f N + +++G            ++++++++d    ++g++D++++IWK++
     F10C2.3   227 FSNAVGFFAG------------KWWNTEFGD----AHGYFDDHDLIWKHY 260

                   kdaYGYaTafAEDwstagigtFnYlpdefkpGFkkqPtDhYlRPlllavE
                   +++ GY+T++AED+  +g+++FnYl    ++GFkk+P+DhY+RP++l+v+
     F10C2.3   261 REN-GYRTLYAEDY--PGFNLFNYL----SKGFKKKPVDHYFRPYWLNVY 303

                   kqlkyrtrsglnlmyClgrrplhevllDylrqFlpryrdspdipfFgFfW
                   +++ +r++++l    C+g ++ h+ +l+yl qF+ +y+d+p    F+++W
     F10C2.3   304 WTYVHRRSRNL----CYGNHRMHNLQLNYLSQFVSKYKDQP---KFAISW 346

                   snslsHddfnlasalDedllkyLkkleenGlldntivifmSDHGlRfGkl
                   +++l Hd++n++++ Dedl+++Lkk++e+  l+n+++++mSDHG+Rf+++
     F10C2.3   347 LTELGHDWLNQVRYGDEDLANFLKKHVED--LENSYLFIMSDHGHRFDNI 394

                   rrtsqGmlEERlPfmsillPpwlRnyekyPqaveNLelNahrLtTpFDlH
                   r+ts+G+lEERlPf+s++lP++lR   k+ ++v++ ++N+++Lt++FD++
     F10C2.3   395 RKTSIGRLEERLPFFSVSLPKKLR---KDSKLVDTVRKNSKKLTSFFDVY 441

                   aTLkhilnlsslsdkellrrtkaldclpsalprgiSLFlPiPdnRtCstA
                   aT++hiln+s+++d ++ +                SLFlPi+d R+C+tA
     F10C2.3   442 ATFRHILNNSKQPDVMRGE----------------SLFLPIKD-RNCETA 474

                   gIpehwCtCesykeiptndtkekalvrriAekvvdriNellkelnteeEl
                   +Ipe++C+C+ +++++++ +   a++r++Ae++ ++iN++l++
     F10C2.3   475 HIPEEFCVCDTEVPLNVSAN---AQIRTMAEDFAKDINQRLDP------- 514

                   ltplCapLeLqkVe<-*
                    +p+C++L+L++V+
     F10C2.3   515 -HPQCVQLYLKNVI    527



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