Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F11A10.5
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: F11A10.5 CE03185 status:Partially_confirmed TR:Q19337 protein_id:CAA92595.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
ST7 ST7 protein 1587.8 0 1
TPR TPR Domain 7.7 2.3 2
LysR_substrate LysR substrate binding domain 5.0 3.9 1
RNA_pol_Rpb2_7 RNA polymerase Rpb2, domain 7 3.5 8.1 1
ApbE ApbE family 3.2 6.6 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
TPR 1/2 249 265 .. 6 22 .. 4.1 24
LysR_substrate 1/1 233 276 .. 171 213 .] 5.0 3.9
TPR 2/2 360 374 .. 20 34 .] 3.5 35
ApbE 1/1 353 384 .. 303 345 .] 3.2 6.6
RNA_pol_Rpb2_7 1/1 380 393 .. 79 92 .] 3.5 8.1
ST7 1/1 1 529 [. 1 554 [] 1587.8 0
Alignments of top-scoring domains:
TPR: domain 1 of 2, from 249 to 265: score 4.1, E = 24
*->nlGnaylklgkydeAie<-*
+l+++ +k+g++ eAi+
F11A10.5 249 RLAMCARKQGRLREAIK 265
LysR_substrate: domain 1 of 1, from 233 to 276: score 5.0, E = 3.9
*->grLvvlplpdpplp.rpiylvyrrgrrlspavraFidflreala<-*
+ ++ ++l + +r+++++ r++ rl+ a++ F+d+ r++
F11A10.5 233 DAVRKRDLTIQTYIkRRLAMCARKQGRLREAIKGFRDLSRDQSL 276
TPR: domain 2 of 2, from 360 to 374: score 3.5, E = 35
*->AieayekALeldPnn<-*
Aiea+++A e +P+
F11A10.5 360 AIEALTRAMEFNPHV 374
ApbE: domain 1 of 1, from 353 to 384: score 3.2, E = 6.6
*->vlgekksariaalrevwAvlrliddgsvfaenlavlriekass<-*
++++++ +i+al +A ++f+++ +++++e s
F11A10.5 353 LSSAEQ-TAIEALT--RA--------MEFNPHVPPYLLELRSM 384
RNA_pol_Rpb2_7: domain 1 of 1, from 380 to 393: score 3.5, E = 8.1
*->ELqSLgldirlyle<-*
EL+S+ + ++++l+
F11A10.5 380 ELRSMIMPPEHFLK 393
ST7: domain 1 of 1, from 1 to 529: score 1587.8, E = 0
*->ivcSWTyLWllWiaLVlvLlyiLRvPLkIsdsLesVsatsylNtLTP
++cSWT+LWllWiaLV+vLl++LR+PLkIs+sLesV+atsy+N+LTP
F11A10.5 1 MACSWTFLWLLWIALVAVLLFALRGPLKISESLESVTATSYFNNLTP 47
KFYVALTGTSSLvSGlILIFEWWYFkkyGtsFiEqvsvsHLRPLLaGvDn
KFYVALTGTSSLvSG+ILIFEWWYFk++ aG+D
F11A10.5 48 KFYVALTGTSSLVSGIILIFEWWYFKNN-----------------AGID- 79
nasdeenSdNddSieNrksVsECKVWRNPlaLFRaAEYNRyrkvTnrEPL
a+dee+SdNd+SieN+k+V+ECKVWRNP+aLFRaAEYNR+rk+Tn+EPL
F11A10.5 80 -AGDEEGSDNDESIENTKTVPECKVWRNPMALFRAAEYNRFRKETNSEPL 128
TYYDMNLSAQDHQslFtCDeDqlRaedeIMQkAWREReseeRIsaAreAL
TYYDMNLSAQDHQslF+CDeDq+Rae+eIMQ+AWREReseeRI++Ar+AL
F11A10.5 129 TYYDMNLSAQDHQSLFMCDEDQGRAEYEIMQVAWRERESEERIQTARAAL 178
eINPECAsAlvLLAEEEaeTvaeAEkLlkrALkAidstlrrYssnQlasy
+INPECAsAlvLLAEEE+eTv++AE+Ll+rAL+Ai+stl++Ys+nQ+asy
F11A10.5 179 AINPECASALVLLAEEESETVSQAENLLRRALRAIESTLNSYSNNQIASY 228
asnydAvrkRDltvlvYIKRRLAMCARklGRlREAvKgfRDLskdfsLls
a+n+dAvrkRDlt+++YIKRRLAMCARk+GRlREA+KgfRDLs+d+sL++
F11A10.5 229 AQNGDAVRKRDLTIQTYIKRRLAMCARKQGRLREAIKGFRDLSRDQSLST 278
llsvqdNLlEAlLElQAYADVQalLvkYDGYGAPCsYdlrlPkSAaisYT
llsvqdNL+EA+LE+QAYADVQ+lLv+YDGYGAPCsY+lr+P+SAa+sYT
F11A10.5 279 LLSVQDNLIEACLEVQAYADVQNLLVRYDGYGAPCSYELREPRSAAMSYT 328
aALLKvRAVadkFrpeAdSsiRRGLSsAEqtAvEAltRAvEFNPHVPkYL
+ALLKvRAVa++Fr++AdSsiRRGLSsAEqtA+EAltRA+EFNPHVP+YL
F11A10.5 329 SALLKVRAVAENFRCAADSSIRRGLSSAEQTAIEALTRAMEFNPHVPPYL 378
LElkSlIlPPEHiLKRGDSEAlAYAFFHlaHWKRvdGALnLLsivWkdtF
LEl+S+I+PPEH+LKRGDSEAlAYAFFH++HWKR+dGAL+LLsivWkd
F11A10.5 379 LELRSMIMPPEHFLKRGDSEALAYAFFHIQHWKRIDGALQLLSIVWKD-- 426
RfvPkvlkdknlFysyPiClEsADkELLPSfHEvSVyPKkEltlfiLlta
fvPkv+kdkn+F+s+ lEsADkELLPS+HE+SV+PK+E+tl++Ll++
F11A10.5 427 -FVPKVSKDKNAFSSQ---LESADKELLPSWHEQSVFPKTEGTLMMLLQT 472
flClaiaiLAlLaqQFPelsGviakaalsilfaflefvvekVesilPssl
f+Clai+iLA+LaqQFP++sG+i+++a++i+++f+e++v++V++++P+++
F11A10.5 473 FICLAICILAVLAQQFPASSGEIFRTAATIGMQFYENSVYTVSQWAPGNI 522
ihyLark<-*
i+yLa+k
F11A10.5 523 IPYLASK 529