Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F11C3.3
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Query: F11C3.3 CE09349 locus:unc-54 myosin heavy chain status:Partially_confirmed TR:O02244 protein_id:CAB05505.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Myosin_tail Myosin tail 1727.7 0 3
myosin_head Myosin head (motor domain) 1558.5 0 1
Myosin_N Myosin N-terminal SH3-like domain 80.1 4.5e-23 1
UPF0042 Uncharacterised P-loop ATPase protein fam 7.5 0.3 1
DPRP Deoxyribodipyrimidine photolyase-related 6.4 0.37 1
Vps53_N Vps53-like, N-terminal 6.3 0.9 1
DUF298 Domain of unknown function (DUF298) 5.8 2.7 1
PB1 PB1 domain 5.7 4 1
Nop Putative snoRNA binding domain 5.1 6.7 2
ABC_tran ABC transporter 4.8 3.1 1
HALZ Homeobox associated leucine zipper 4.8 7.9 1
MarR MarR family 4.3 7.1 1
TSC22 TSC-22/dip/bun family 3.6 6 1
dfp DNA / pantothenate metabolism flavoprotei 3.5 7.7 1
DUF260 Protein of unknown function DUF260 2.0 2.9 1
SlyX SlyX 1.4 4.7 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
dfp 1/1 54 70 .. 262 281 .] 3.5 7.7
Myosin_N 1/1 30 73 .. 1 48 [] 80.1 4.5e-23
ABC_tran 1/1 167 181 .. 1 15 [. 4.8 3.1
UPF0042 1/1 168 181 .. 1 15 [. 7.5 0.3
myosin_head 1/1 83 775 .. 1 734 [] 1558.5 0
DPRP 1/1 778 807 .. 498 528 .] 6.4 0.37
TSC22 1/1 955 976 .. 15 36 .. 3.6 6
Myosin_tail 1/3 898 978 .. 412 492 .. -11.9 3.1e+04
Myosin_tail 2/3 1030 1076 .. 235 281 .. 1.1 19
MarR 1/1 1077 1117 .. 67 107 .] 4.3 7.1
DUF260 1/1 1109 1149 .. 81 119 .] 2.0 2.9
HALZ 1/1 1507 1528 .. 24 45 .] 4.8 7.9
PB1 1/1 1547 1575 .. 58 85 .] 5.7 4
Nop 1/2 1721 1744 .. 1 24 [. 1.8 48
Vps53_N 1/1 1738 1781 .. 29 72 .. 6.3 0.9
SlyX 1/1 1823 1833 .. 1 11 [. 1.4 4.7
Nop 2/2 1817 1834 .. 136 153 .] 4.1 12
DUF298 1/1 1821 1844 .. 1 33 [. 5.8 2.7
Myosin_tail 3/3 1077 1936 .. 1 864 [] 1762.0 0
Alignments of top-scoring domains:
dfp: domain 1 of 1, from 54 to 70: score 3.5, E = 7.7
*->rViiVskndsegeevlldkk<-*
+V+iV+ +g+ev+l+k+
F11C3.3 54 QVTIVT---ARGNEVTLKKE 70
Myosin_N: domain 1 of 1, from 30 to 73: score 80.1, E = 4.5e-23
*->KknVWVpDekegfikgeIkesteGdkVtVktedtrsGktvtvkkDdv
KknVW+pD++eg+++geI+ t+Gd+Vt+ t++ G++vt+kk+ v
F11C3.3 30 KKNVWIPDPEEGYLAGEIT-ATKGDQVTIVTAR---GNEVTLKKELV 72
q<-*
q
F11C3.3 73 Q 73
ABC_tran: domain 1 of 1, from 167 to 181: score 4.8, E = 3.1
*->GevlalvGpNGaGKS<-*
++ ++G++GaGK+
F11C3.3 167 NQSMLITGESGAGKT 181
UPF0042: domain 1 of 1, from 168 to 181: score 7.5, E = 0.3
*->ielvivtGrSGAGKs<-*
+ +++tG SGAGK+
F11C3.3 168 -QSMLITGESGAGKT 181
myosin_head: domain 1 of 1, from 83 to 775: score 1558.5, E = 0
*->vEDmveLtyLnEpsvlhNLKkRYksdlIYTYsGlvLvsvNPYkrLpq
+EDm++L++Ln++svlhNL++RY+++lIYTYsGl++v++NPYkrLp
F11C3.3 83 TEDMSNLSFLNDASVLHNLRSRYAAMLIYTYSGLFCVVINPYKRLP- 128
iYteeiiakYrGKrryElPPHiFAiADeAYRsMlsdkeNQsilISGESGA
iYt+++ +++GKr++E+PPH+FA++DeAYR+Ml+d+eNQs+lI+GESGA
F11C3.3 129 IYTDSCARMFMGKRKTEMPPHLFAVSDEAYRNMLQDHENQSMLITGESGA 178
GKTEntKkvmqYlAaVsggnsgngeev.psvkvgrvEdqILqsNPiLEAF
GKTEntKkv++Y+AaV+++++++g+ev+p++k+ ++EdqI+q+NP+LEAF
F11C3.3 179 GKTENTKKVICYFAAVGASQQEGGAEVdPNKKKVTLEDQIVQTNPVLEAF 228
GNAKTtRNNNSSRFGKyieIqFdktGkivGakIenYLLEKSRVvyQtegE
GNAKT+RNNNSSRFGK+i+I+F+k+G++++++Ie+YLLEKSRV++Q++gE
F11C3.3 229 GNAKTVRNNNSSRFGKFIRIHFNKHGRLASCDIEHYLLEKSRVIRQAPGE 278
RNFHIFYQLLaGasqqnlkkeLkLtndpedYhYLnqggevkpcytvdGiD
R++HIFYQ+++ + ++ lkkeL+L+ ++dY+++ q++ +++dGiD
F11C3.3 279 RCYHIFYQIYSDFRPE-LKKELLLDLPIKDYWFVAQAE-----LIIDGID 322
DsegnveeFketrkAmdilGftdeeqrsIFrivAaILhlGNikFkqrrke
D+ eeF++t++A+dil+f++ e+++++r+++a++h+GN+kFkqr++e
F11C3.3 323 DV----EEFQLTDEAFDILNFSAVEKQDCYRLMSAHMHMGNMKFKQRPRE 368
eaaipddnnadtkalekaaeLlGvdatelekALlsrriktGtegrkStvt
e+a+pd+ t ++eka++++G+ ++e++kAL+++r+k+Gte+ v+
F11C3.3 369 EQAEPDG----TDEAEKASNMYGIGCEEFLKALTKPRVKVGTEW----VS 410
kpqnveQAsyARDALAKalYsRLFdWIVnrINktLdfkakegqdasfIGV
k+qn+eQ+++A++A+AK lYsR F+W+V+++N tLd+k +++ ++fIGV
F11C3.3 411 KGQNCEQVNWAVGAMAKGLYSRVFNWLVKKCNLTLDQKGIDR--DYFIGV 458
LDIyGFEIFekNSFEQLCINYvNEKLQQfFNhhmFklEQEEYkrEGIeWt
LDI+GFEIF++NSFEQL+IN+vNEKLQQfFNhhmF+lEQEEY rEGI+W+
F11C3.3 459 LDIAGFEIFDFNSFEQLWINFVNEKLQQFFNHHMFVLEQEEYAREGIQWV 508
fIdFgdNLQpcIDLIEkKsPpGILsLLDEeClfPkaqSGtDqtFldKLys
fIdFg++LQ+cI+LIEk+ +GI+s+LDEeC++Pka tD t+++KL++
F11C3.3 509 FIDFGLDLQACIELIEKP--LGIISMLDEECIVPKA---TDLTLASKLVD 553
tfskhpahfekfsPrfrqkksg.ahFiikHYAGdVeYnvegFleKNKDpL
++++++++fek P+++++k+g+ahF+++HYAG+V+Yn+ ++leKNKDpL
F11C3.3 554 QHLGKHPNFEK--PKPPKGKQGeAHFAMRHYAGTVRYNCLNWLEKNKDPL 601
fddlisllksSs.npllaeLFpdeetlagpfeadpsslskkrksgskNks
+d+++s++k+S++n+ll+e+++d++t +++ +++ k++ +g
F11C3.3 602 NDTVVSAMKQSKgNDLLVEIWQDYTT-----QEEAAAKAKEGGGG----- 641
tgkktkksnfiTvGaqfKeslneLMktLsstnLPHFvRCIkPNekKkagv
++kk+k+++f+Tv+++++esln+LM++L++t+ PHF+RCI+PNekK++g+
F11C3.3 642 GKKKGKSGSFMTVSMLYRESLNNLMTMLNKTH-PHFIRCIIPNEKKQSGM 690
fDaslVlhQLrclGVLEgiRIrRaGFPnRitfdeFlqRYriLapktwPkw
+Da+lVl+QL+c+GVLEgiRI+R+GFPnR ++++F+qRY+iLa+k++ k+
F11C3.3 691 IDAALVLNQLTCNGVLEGIRICRKGFPNRTLHPDFVQRYAILAAKEA-KS 739
sgdakkgek.nEIvaceklLqsLnlDkgeeyrfGkTKIFFR<-*
+ d+kk++++ ++ kl ++ +l+ e++r+G TK+FF+
F11C3.3 740 D-DDKKKCAeA---IMSKLVNDGSLSE-EMFRIGLTKVFFK 775
DPRP: domain 1 of 1, from 778 to 807: score 6.4, E = 0.37
*->lYrhLdkmkdaGeleAireeAealregveal<-*
+++hL++++d+ +l+ i++ ++ +++l
F11C3.3 778 VLAHLEDIRDE-KLATILTGFQSQIRWHLGL 807
TSC22: domain 1 of 1, from 955 to 976: score 3.6, E = 6
*->EVEvLkeqIkeLveklnqLeeE<-*
EVE Lk qI++L+ l + e E
F11C3.3 955 EVEALKKQIQDLEMSLRKAESE 976
Myosin_tail: domain 1 of 3, from 898 to 978: score -11.9, E = 3.1e+04
*->tElfrlKneleElkDqvEaLrRENKnLqdEikDLtdqLgEgGRnvHE
t l ++K +l+++ ++++ L+ K + ++ +L dqL++ ++ +
F11C3.3 898 TNLESTKTQLSDAEERLAKLEAQQKDASKQLSELNDQLADNEDRTAD 944
LEKarRrLEaEkdELqaALeEAEaALeqeEsKvl<-*
+ a++ EaE + L+ ++ ++E L+ +Es ++
F11C3.3 945 VQRAKKKIEAEVEALKKQIQDLEMSLRKAESEKQ 978
Myosin_tail: domain 2 of 3, from 1030 to 1076: score 1.1, E = 19
*->sklKsqlesQLEeAkRslEEEsReRanLqaqlrnlehDlDslrEqlE
+k+K+ le+ L+++ slE E R+Ra L q r +e +l ++E ++
F11C3.3 1030 NKVKAKLEQTLDDLEDSLEREKRARADLDKQKRKVEGELKIAQENID 1076
<-*
F11C3.3 - -
MarR: domain 1 of 1, from 1077 to 1117: score 4.3, E = 7.1
*->eeGrelf.leealpkraeaieellanltaeEketLekllakL<-*
e+Gr+ ++le l+k++ +++ + ++l ++E++ ++kl +++
F11C3.3 1077 ESGRQRHdLENNLKKKESELHSVSSRL-EDEQALVSKLQRQI 1117
[output cut off at A = 10 top alignments]