Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F11E6.1b
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Query: F11E6.1b CE26698 glucosylceramidase (O-glycosyl hydrolase) status:Partially_confirmed TR:Q9BH43 protein_id:CAC35813.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Glyco_hydro_30 O-Glycosyl hydrolase family 30 570.2 1.4e-167 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Glyco_hydro_30 1/1 24 457 .. 1 478 [. 570.2 1.4e-167
Alignments of top-scoring domains:
Glyco_hydro_30: domain 1 of 1, from 24 to 457: score 570.2, E = 1.4e-167
*->ArdCieKtF..GktgvVCVCnltyCDeiDPpldlalGqaarYttsrs
C +Kt+++ +VCVCn+t+CDei+P ++a G+a Y +s
F11E6.1b 24 --QCNPKTYdgAFLNIVCVCNATFCDEIEPIGEIAEGKAIVYRSSLD 68
GaRlhrdvvyata...nepltgLhlTidsskkyQtiqGFGstfsDAsgaN
G Rl r + +++ + + +Tid s ++Q i GFG++f+D +g
F11E6.1b 69 GDRLKRMSMKMKEklrKNESVNVTITIDASERFQNIFGFGGAFTDSAGDQ 118
lksLpdklqdliLkqYFSdeGlnlqfgRVPiAScDFSiRvYtYaDtadDy
sL++ lq+ i +YF Gl +++gRVPiAScDFS Y+Y+D+ dD+
F11E6.1b 119 FVSLSETLQNYIVDSYFGKNGLEYNIGRVPIASCDFSTHEYSYDDVHDDF 168
qlanFsLpkEDtqwKIPyikrAqkynqrPlkLlAsPWtaPgWLKTtkavk
+l++F Lp ED ++KIP+ik+A + ++L+AsPW+aPgW+K t+ ++
F11E6.1b 169 ELKHFALPDEDLKLKIPFIKKAIEKTEGNIQLFASPWSAPGWMKVTGRMR 218
GkGsLkGkagDiYHqtyarYfvkFLeeYaksgiqFWglstqNePtaGsdk
G G++ ++ q+ya Yf kF e+Y + i FWgl+ qNeP+ G d
F11E6.1b 219 GGGAM--RNDKRVYQAYADYFFKFFEAYSSHAITFWGLTIQNEPSTGADM 266
kykiQslgFTaEhQRDFIkrDlGPaLanStaGknVklLiLDDnRgnLPkW
+ Q + +TaE+ RDF k+ lGP L+ k+++LDD Rg+LP W
F11E6.1b 267 AWRWQTMNYTAETMRDFLKKYLGPKLKENKLTETLKVMVLDDGRGLLPGW 316
AdtVLnDkdAAkYVsGIaVHaYqDfLaeadahLgeTHrkhPnvfifgtEA
Adt+ nD++A kY G+aVH+Y L L+ T r hP fifgtEA
F11E6.1b 317 ADTIFNDPEATKYADGVAVHWYGN-LYSPAVLLDITQRHHPTKFIFGTEA 365
seGskskdqsVdyGswDRaedyssdIldnrenivlkkflenwGkvrkknf
+ G+ G w ae+y+sdI+ +
F11E6.1b 366 CAGYAIHH-GPLMGDWFTAENYASDIISD--------------------- 393
kiliffsnfffhnfffyiffqnlnnwvtGWTerNLvLdaeGGPsWVsnFv
ln + tGWT++NL Ld GGP WV nFv
F11E6.1b 394 ----------------------LNHHFTGWTDWNLCLDDMGGPTWVDNFV 421
DaPvIafpalaqFYKQPMFYaiaHFShFikpGavRi<-*
D+P+I+ + FYKQPMFYa++HFS+F++ G+ R+
F11E6.1b 422 DSPIIVNRTGQEFYKQPMFYAMGHFSKFLPRGSTRV 457