Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F11F1.1b
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Query: F11F1.1b CE23645 status:Predicted TR:Q9TW52 protein_id:CAB54300.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
HSP70 Hsp70 protein 641.5 4.5e-189 1
DUF516 Protein of unknown function (DUF516) 6.8 0.99 1
FGGY FGGY family of carbohydrate kinases, N 4.5 4 1
BcrAD_BadFG BadF/BadG/BcrA/BcrD ATPase family 3.9 4.1 1
Hydantoinase_A Hydantoinase/oxoprolinase 2.5 3.9 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
FGGY 1/1 1 12 [. 1 12 [. 4.5 4
DUF516 1/1 147 169 .. 249 271 .] 6.8 0.99
Hydantoinase_A 1/1 173 208 .. 305 341 .. 2.5 3.9
BcrAD_BadFG 1/1 331 375 .. 264 313 .] 3.9 4.1
HSP70 1/1 2 575 .. 1 586 [. 641.5 4.5e-189
Alignments of top-scoring domains:
FGGY: domain 1 of 1, from 1 to 12: score 4.5, E = 4
*->yvlGiDcGTtst<-*
+ +GiD+GTt++
F11F1.1b 1 MSIGIDLGTTFS 12
DUF516: domain 1 of 1, from 147 to 169: score 6.8, E = 0.99
*->srGevrrmvkelaeenGieveki<-*
++ +rr+ +e+ae +G++v++i
F11F1.1b 147 FNATQRRATEEAAEIAGLKVLRI 169
Hydantoinase_A: domain 1 of 1, from 173 to 208: score 2.5, E = 3.9
*->PAgGVvGaaylselagfenPvIgFDmGGTSTDVslit<-*
P + ++++++ ++++ ++n +++ D GG ++DV++++
F11F1.1b 173 PTAAAIAYSLKGQRLSRRN-ILIYDLGGGTFDVAAVN 208
BcrAD_BadFG: domain 1 of 1, from 331 to 375: score 3.9, E = 4.1
*->vvltGGvaknWeglvkalrdelsekilevfkvnvlpdpqyagAiGAa
+vl+GG + + l++ +++ +++ + ++++p a A GAa
F11F1.1b 331 IVLVGGSTRI-PILKNIIKQSFESNTRIC----ESIHPDEAVAYGAA 372
LlA<-*
++A
F11F1.1b 373 IMA 375
HSP70: domain 1 of 1, from 2 to 575: score 641.5, E = 4.5e-189
*->viGIDLGTTNScVAVmeggkpevIaNaeGnRtTPSvVAFtkkGERLV
iGIDLGTT ScVA +++g++ +++N+ G RtTPSv A +++G+ L+
F11F1.1b 2 SIGIDLGTTFSCVAYYQNGQVNILENENGCRTTPSVLAVGEDGDLLI 48
GqaAKrQavtNpeNTvfsvKRlIGRrFddpeVqkdikhvPykvvkdsngd
Gq AK ++ ++N +f+vKR+IGRr+dd q+d++ +P+kv+kd+ng
F11F1.1b 49 GQHAK-DVIGKATNSLFDVKRIIGRRYDDVLLQRDMPLWPFKVEKDDNGI 97
awveveylGkkktftPeeISAmvLqKmKetAEayLGekVtkAVITVPAYF
+++e++ +k+ +f++ +S+ +L+ +K AE LG +V+ AVITVPAYF
F11F1.1b 98 PYLEIHKNEKPLKFSAVTVSSLILRCLKYNAERKLGLEVKSAVITVPAYF 147
NDaQRQATKDAGkIAGLnVlRIiNEPTAAALAYGLDKkdlpeeekernil
N QR+AT A+ IAGL VlRI NEPTAAA+AY L + l rnil
F11F1.1b 148 NATQRRATEEAAEIAGLKVLRILNEPTAAAIAYSLKGQRLS----RRNIL 193
VfDLGGGTFDVSiLeigdGVFEVkaTnGDThLGGeDFDnrlvdhlveeFk
++DLGGGTFDV + +++ Vka GDThLGG+D Dn ++ ++eeFk
F11F1.1b 194 IYDLGGGTFDVAAVNVDGPRITVKAKGGDTHLGGQDIDNIIMIKMLEEFK 243
kkegiDlskDkrAlqRLreAAEKAKieLSsssqTeinLpfitadadGPkh
+++giDl+ + rAl R+r AAE AKi+LS+ ++ ++++ +++ G ++
F11F1.1b 244 NRHGIDLKGNYRALKRIRKAAEVAKITLSA--SSVARIELECLHL-G-ID 289
lsetLtRAkFEeLvadLfeRtlePvekaLkDAklsksdIdeVvLVGGSTR
+ + ++R FE+ ++ L+ t++ ve++++ A+l+ks+I+e+vLVGGSTR
F11F1.1b 290 FIMRISRTDFESWIENLLMATVIHVERVIREANLKKSQINEIVLVGGSTR 339
IPkVqelVkefFGdGKePskgvNPDEAVAiGAAvQaGVLsGseeVkDvlL
IP + ++k+ F + +++PDEAVA+GAA+ a+VLsG+eeV+D+ L
F11F1.1b 340 IPILKNIIKQSFESNTRICESIHPDEAVAYGAAIMAAVLSGAEEVQDMRL 389
LDVtPLSLGIETlGGvmtklIeRNTTIPTkksqiFSTaaDNQtaVeIqVl
DV+P S+G+ + m lI++ T++P k ++F +D Qt+ ++ V+
F11F1.1b 390 IDVIPMSIGVQCNRDYMSVLIKKGTVFPCTKRKTFINSDDFQTSINVPVY 439
QGERelakDNklLGrFeLdGIpPAPrGvPqIEVtFdIDANGIlnVsAkDk
+GER l+ +N++LG+ L I+P rG+ + t+++D NGIl+ +A D+
F11F1.1b 440 EGERVLCSHNRQLGEISLP-IQPKRRGESVVDITLEVDYNGILQATALDL 488
gtgkeqkItItnssgrLsddEIerMvkdAEkyaeeDkkrkeriEakNeaE
t k tI + ++ EI+ M ++E+ D+ +k+r + +++E
F11F1.1b 489 NTKKAITTTILYDCCTYTQPEIDEMTSQSEEDRIFDEHFKMRYKQLQKSE 538
syvystekslkeeklgdklseadkekiekkvedaiewLk<-*
++y + l++ ++ +++++ + +++ ve i wL+
F11F1.1b 539 DMAYGYKHRLEKV--KGSVEPGKFSNLMETVEREISWLS 575