Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F11G11.9
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Query: F11G11.9 CE09351 status:Partially_confirmed SW:P91247 protein_id:AAB37840.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Rhodanese Rhodanese-like domain 31.5 4.3e-08 1
Ribosomal_L2 Ribosomal Proteins L2, RNA binding doma 7.0 2.6 1
DNA_ligase_OB NAD-dependent DNA ligase OB-fold domain 4.7 7.3 1
U79_P34 HSV U79 / HCMV P34 2.5 5.2 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
U79_P34 1/1 116 127 .. 1 21 [. 2.5 5.2
Rhodanese 1/1 8 147 .. 1 132 [] 31.5 4.3e-08
Ribosomal_L2 1/1 190 202 .. 69 81 .] 7.0 2.6
DNA_ligase_OB 1/1 192 203 .. 48 59 .. 4.7 7.3
Alignments of top-scoring domains:
U79_P34: domain 1 of 1, from 116 to 127: score 2.5, E = 5.2
*->MyAedrRGsPivvvRkYgTFd<-*
M+A R+Y+TF+
F11G11.9 116 MAAAS---------RAYWTFR 127
Rhodanese: domain 1 of 1, from 8 to 147: score 31.5, E = 4.3e-08
*->tagelkallesapkliliDvRspef.Ge...................
+++++ ++ + ++ ++D+ + f+ + + + + + ++ + + +
F11G11.9 8 EPKWVVQNFG---NIRILDASWT-FkPKadvaeykakyynkfgvgmn 50
...ryeyegGHIpgAvNvpleeeiealldrsgilpdieklhllkdpeela
+ + ey HI gA +++ i+ + ++ ++ +l +pee+
F11G11.9 51 elkNPEYLAEHINGAAHFN--FDIAYYPSEDERF-------TLYTPEEFS 91
klfgelgsskdkrvivycrsgrdllrnrrsalaalllkklgypeVyiLkG
++ +lg+++ +++++y r+ + ++ + +a+++++ gy++V++L+G
F11G11.9 92 SYVKRLGVFNGDHLVIYGRGKD--GGMAAASRAYWTFRYYGYTTVSVLNG 139
GykeWlak<-*
G ++++
F11G11.9 140 GIEAFKLA 147
Ribosomal_L2: domain 1 of 1, from 190 to 202: score 7.0, E = 2.6
*->apeGlkvGdtivs<-*
a++G+kvGdt+v+
F11G11.9 190 AAKGIKVGDTVVI 202
DNA_ligase_OB: domain 1 of 1, from 192 to 203: score 4.7, E = 7.3
*->kDIrIGDtVvvr<-*
k+I++GDtVv++
F11G11.9 192 KGIKVGDTVVIS 203