Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F12A10.4
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Query: F12A10.4 CE01907 Neprilysin status:Partially_confirmed TR:Q09946 protein_id:AAA68297.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Peptidase_M13 Peptidase family M13 57.9 3.7e-17 2
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Peptidase_M13 1/2 492 557 .. 1 77 [. 30.9 1e-08
Peptidase_M13 2/2 626 656 .. 192 222 .] 26.7 2.1e-07
Alignments of top-scoring domains:
Peptidase_M13: domain 1 of 2, from 492 to 557: score 30.9, E = 1e-08
*->NAyynpefNsitfpagilvpPffdltyPravnskyGgiGfVlgHEig
+y+ e+N+it ++l +Pf+ ++ P+++n ++ i + + +
F12A10.4 492 --FYSVEKNEITISRALLHYPFMSANLPNYTN--FATIASKILPQMI 534
HgFDdqGiqldeeGsLadcwnlrdWkwtde<-*
H+FD+ G+ +d +G n r+W w +e
F12A10.4 535 HIFDERGRFYDSDG------NHRNW-WNTE 557
Peptidase_M13: domain 2 of 2, from 626 to 656: score 26.7, E = 2.1e-07
*->vNgavrnmPaFasaFnCkpGdkMfpepekrc<-*
vN a++ +P+F+saF+C G kM+p ++++
F12A10.4 626 VNEALASVPQFNSAFKCNNGTKMNPPTKCKL 656