Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm2/seq/F12A10.4
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Query:  F12A10.4  CE01907   Neprilysin status:Partially_confirmed TR:Q09946 protein_id:AAA68297.1

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N
--------      -----------                               -----    ------- ---
Peptidase_M13 Peptidase family M13                       57.9    3.7e-17   2

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
Peptidase_M13   1/2     492   557 ..     1    77 [.    30.9    1e-08
Peptidase_M13   2/2     626   656 ..   192   222 .]    26.7  2.1e-07

Alignments of top-scoring domains:
Peptidase_M13: domain 1 of 2, from 492 to 557: score 30.9, E = 1e-08
                   *->NAyynpefNsitfpagilvpPffdltyPravnskyGgiGfVlgHEig
                        +y+ e+N+it   ++l +Pf+ ++ P+++n  ++ i + +   +
    F12A10.4   492    --FYSVEKNEITISRALLHYPFMSANLPNYTN--FATIASKILPQMI 534

                   HgFDdqGiqldeeGsLadcwnlrdWkwtde<-*
                   H+FD+ G+ +d +G      n r+W w +e
    F12A10.4   535 HIFDERGRFYDSDG------NHRNW-WNTE    557

Peptidase_M13: domain 2 of 2, from 626 to 656: score 26.7, E = 2.1e-07
                   *->vNgavrnmPaFasaFnCkpGdkMfpepekrc<-*
                      vN a++ +P+F+saF+C  G kM+p  ++++
    F12A10.4   626    VNEALASVPQFNSAFKCNNGTKMNPPTKCKL    656



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