Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F13B12.4
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Query: F13B12.4 CE05602 cysteine synthase like status:Partially_confirmed TR:Q19374 protein_id:CAA94589.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
PALP Pyridoxal-phosphate dependent enzyme 187.3 2.5e-54 1
OspD Borrelia outer surface protein D (OspD) 5.4 1.4 1
DUF458 Protein of unknown function (DUF458) 5.3 4.5 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DUF458 1/1 11 23 .. 152 164 .] 5.3 4.5
OspD 1/1 1 41 [. 1 53 [. 5.4 1.4
PALP 1/1 53 377 .. 1 375 [] 187.3 2.5e-54
Alignments of top-scoring domains:
DUF458: domain 1 of 1, from 11 to 23: score 5.3, E = 4.5
*->SyAAsciAdkiTK<-*
S+ Asc A iTK
F13B12.4 11 SISASCLAEDITK 23
OspD: domain 1 of 1, from 1 to 41: score 5.4, E = 1.4
*->mKKLiKiLLlsLFLLLsisCvhdkqelssksnLnnqkgylDnEGvns
+K+LLl+LFL +s sC + s s + nE +
F13B12.4 1 ----MKLLLLALFLSISASCLAEDITKISESRI-------PNEDAVP 36
kdYEsK<-*
dYE+K
F13B12.4 37 -DYEAK 41
PALP: domain 1 of 1, from 53 to 377: score 187.3, E = 2.5e-54
*->vtelignTPLvrlnrlskelgeglganaaveiylKlEdlnGPtGSfK
+ g+TP+++ ++ +a +i++K E t+ K
F13B12.4 53 ERRKMGHTPMTKFSPPG-----FPNA----DIFFKNETAT-ATRTLK 89
DRglalnmillAeklgkkggivpgtvqveskttiiEptsGNtGialAlaa
+R a++++l+A +g+++ ++ ++++tsGNtG+a A+++
F13B12.4 90 HRF-AWALLLWAIT---EGKVTSK------TSAVYDSTSGNTGSAEAYMC 129
allGlkciivMPatdtsreKraqlralGAeaivvpvagGgsddladaiak
l +++ + v+ ++ ++eK++q++++G+++i+vpva ++ ++ +k
F13B12.4 130 TLVNVPYYAVVADN-LEKEKVKQIESFGGKIIKVPVAL-RNAKAKEFADK 177
AeelaeenpentayllnqaaGpfdnPanpeiagqktigpEIweQlggkei
+ + +n a + f+ + + + ++ EI Ql+ ++
F13B12.4 178 NHGFYMNQFGN-AEKAEE----FHESGDFY-FESTNVYHEIIVQLKKDKE 221
sigrlpDavvapvGgGGtitGiarylKelnpngkidvlelpvkvigVEPe
+i++ pD++v ++G+GGti+ ++ry+ ++ +kv+ + +
F13B12.4 222 QIVKIPDYFVHSAGTGGTISSVGRYVARYGAP---------TKVVLSDSQ 262
gsavlsgslkatltlagkpGplhgrdskyllqDepvtlpetksigiGlgv
s ++ +++++t +++G +++ ++++ giG+g+
F13B12.4 263 YSLFYDYVIGHKFT--NQSGA--------------GIWTPPGIAGIGYGY 296
prvgefvppildellv.rdevvtVtdeealeaarlLareEGifvgpssga
+ + +++ + + + + e+++ +d +++++r + +e G+ vgps+ +
F13B12.4 297 DIEPVWYGETTSLTRNvIHEAMKMPDIASVATMR-ILDEKGYNVGPSTSL 345
avaaalklakegkk...pegkgkriVvilsgg<-*
++ l a ++k+++++++ +iV++ ++
F13B12.4 346 NFLVSLYKAYQNKArksAIKHRLTIVTLACDP 377