Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F13D12.4
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Query: F13D12.4 CE02183 methylmalonate-semialdehyde dehydrogenase status:Confirmed SW:P52713 protein_id:CAA88946.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
aldedh Aldehyde dehydrogenase family 635.8 2.4e-187 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
aldedh 1/1 37 506 .. 1 492 [] 635.8 2.4e-187
Alignments of top-scoring domains:
aldedh: domain 1 of 1, from 37 to 506: score 635.8, E = 2.4e-187
*->ewvdsasgktfevvNPankgevigrvpeataeDvdaAVkAAkeAfks
+ v+s++ ++e +NPa+ +evi+ vp+at+++++aAV++Ak Af++
F13D12.4 37 QAVESKTTDFVELTNPAT-NEVIAMVPNATQAEMQAAVDSAKNAFNT 82
GpwWakvpaseRariLrkladlieeredeLaaletlDlGKplaeAkgDte
W+++++ R + ++kl++li+++ + La+ +t+++GK+l++A+g +
F13D12.4 83 ---WKNTSPLTRQQCMFKLQALIKRDMKKLAESITIEQGKTLPDAEG--D 127
vgraideiryyagwarklmgerrvipslatdgdeelnytrrePlGVvgvI
v r+++++++++ ++++mg ++ p++++d ++++++r PlGV+++I
F13D12.4 128 VSRGLQVVEHACSVPSLMMG--ETLPNVSRD---MDTHSYRIPLGVTAGI 172
sPWNFPlllalwklapALAaGNTVVlKPSEqTPltalllaelieeaGann
P+NFP++++lw+++ ALA+GNT+V+KPSEq P a ll+el +eaG
F13D12.4 173 CPFNFPAMIPLWMFPVALATGNTMVIKPSEQDPGAAQLLVELAKEAG--- 219
lPkGVvnvvpGfGaevGqaLlshpdidkisFTGSteVGklimeaAAaknl
+P+G+vn+++G ++++++++++pdi++isF+G + Gk+i+e +akn+
F13D12.4 220 VPDGCVNIIHG-QHSAVNFICDNPDIKAISFVGGDAAGKHIYE-RGAKNG 267
kkVtLELGGKsPvIVfdDADLdkAverivfgaFgnaGQvCiApsRllVhe
k+V+ +G+K++ ++++DA+ +++ ++ +aFg aGQ+C+A + V
F13D12.4 268 KRVQSNMGAKNHGVIMADANKEQTLNQLTAAAFGAAGQRCMALT-TAVLV 316
siydeFveklkervkklkliGdpldsdtniyGPlIseqqfdrvlsyIedg
+ + ++++l+e++k+lk + + ++dt i GPlIs+q++ rvl++Ie++
F13D12.4 317 GEARAWLPELVEKAKNLK-VNAGWKPDTDI-GPLISKQSKARVLRLIESA 364
keeGAkvlcGGerdeskeylggGyyvqPTiftdVtpdMkImkEEIFGPVl
k+eGA+v +G+ +++ ++ G++v+PTi+++V+p+M++++EEIFGPVl
F13D12.4 365 KKEGAQVPLDGSNITVPGFEN-GNFVGPTILAGVKPNMTCYREEIFGPVL 413
piikfkdldEAIelaNdteYGLAayvFTkdilarafrvakaleaGiVwvN
++++ ++l EAIe++N+ +YG+++++FT++ a+a ++++++++G++++N
F13D12.4 414 VVMEAENLNEAIEIINNNPYGNGTAIFTSN-GATARKFTNEVDVGQIGIN 462
DvcvhaaepqlPFGGvKqSSGiGrehgGkygleeYteiKtVtirl<-*
v++++++p++ F+G + S+ ++ ++Gk+g+++Yt+ KtVt +
F13D12.4 463 -VPIPVPLPMFSFTGSRGSFLGDLNFYGKAGIQFYTQWKTVTQYW 506