Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F13D12.7
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: F13D12.7 CE02186 locus:gpb-1 guanine nucleotide-binding protein beta subunit status:Confirmed SW:P17343 protein_id:CAA88948.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
WD40 WD domain, G-beta repeat 203.2 4.1e-57 7
Pox_A_type_inc Viral A-type inclusion protein repeat 14.5 0.017 1
bZIP bZIP transcription factor 10.1 0.24 1
Myc-LZ Myc leucine zipper domain 7.2 1.8 1
spectrin Spectrin repeat 6.5 2.5 1
G-gamma GGL domain 4.2 5.8 1
DUF578 Protein of unknown function (DUF578) 3.2 9.3 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
G-gamma 1/1 4 18 .. 1 15 [. 4.2 5.8
bZIP 1/1 2 20 .. 47 65 .] 10.1 0.24
Pox_A_type_inc 1/1 2 24 .. 1 23 [] 14.5 0.017
DUF578 1/1 6 26 .. 210 230 .] 3.2 9.3
Myc-LZ 1/1 1 26 [. 7 32 .] 7.2 1.8
spectrin 1/1 2 28 .. 1 27 [. 6.5 2.5
WD40 1/7 45 83 .. 1 39 [] 32.0 2.7e-07
WD40 2/7 87 125 .. 1 39 [] 22.5 0.00013
WD40 3/7 133 170 .. 1 39 [] 31.3 4.1e-07
WD40 4/7 174 212 .. 1 39 [] 38.4 4.1e-09
WD40 5/7 216 254 .. 1 39 [] 49.7 2.5e-12
WD40 6/7 272 298 .. 12 39 .] 18.2 0.0022
WD40 7/7 302 340 .] 1 39 [] 26.7 8.8e-06
Alignments of top-scoring domains:
G-gamma: domain 1 of 1, from 4 to 18: score 4.2, E = 5.8
*->vdqlrkeveqLrkel<-*
+dqlr+e eqL+ ++
F13D12.7 4 LDQLRQEAEQLKSQI 18
bZIP: domain 1 of 1, from 2 to 20: score 10.1, E = 0.24
*->kelerLkkevakLksenee<-*
+el++L++e+++Lks+++e
F13D12.7 2 SELDQLRQEAEQLKSQIRE 20
Pox_A_type_inc: domain 1 of 1, from 2 to 24: score 14.5, E = 0.017
*->rEldrlRrrIsdLekqLsdcrrn<-*
Eld+lR++ ++L++q+++ r++
F13D12.7 2 SELDQLRQEAEQLKSQIREARKS 24
DUF578: domain 1 of 1, from 6 to 26: score 3.2, E = 9.3
*->klEkeieeLkrqlvnkedsnn<-*
+l +e e+Lk+q+++ ++s+n
F13D12.7 6 QLRQEAEQLKSQIREARKSAN 26
Myc-LZ: domain 1 of 1, from 1 to 26: score 7.2, E = 1.8
*->iaEKelLRkRREqLKHKLEqLRnsre<-*
++E ++LR+ EqLK ++ R s +
F13D12.7 1 MSELDQLRQEAEQLKSQIREARKSAN 26
spectrin: domain 1 of 1, from 2 to 28: score 6.5, E = 2.5
*->lllqqFqrdadelesWisekeallsse<-*
+l q+ ++a++l+s i+e+ + ++++
F13D12.7 2 SELDQLRQEAEQLKSQIREARKSANDT 28
WD40: domain 1 of 7, from 45 to 83: score 32.0, E = 2.7e-07
*->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
+tl+gH + ++++ ++ d ++ l+s+S Dg++ +Wd
F13D12.7 45 MRTRRTLrGHLAKIYAMHWASD-SRNLVSASQDGKLIVWD 83
WD40: domain 2 of 7, from 87 to 125: score 22.5, E = 0.00013
*->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
+ ++ ++ +s+v+ +a++p+ g+++a+g+ D+ + +++
F13D12.7 87 TNKVHAIpLRSSWVMTCAYAPS-GSFVACGGLDNICSIYS 125
WD40: domain 3 of 7, from 133 to 170: score 31.3, E = 4.1e-07
*->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
+ ++l+gHt++ +c++f d ++++++S D t+ lWd
F13D12.7 133 VRVSRELpGHTGYLSCCRFLDD--NQIVTSSGDMTCALWD 170
WD40: domain 4 of 7, from 174 to 212: score 38.4, E = 4.1e-09
*->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
g++ + ++gHt+ v++++ spd ++++sg +D + klWd
F13D12.7 174 GQQCTAFtGHTGDVMSLSLSPD-FRTFISGACDASAKLWD 212
[output cut off at A = 10 top alignments]