Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F13E6.5
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: F13E6.5 CE03202 status:Partially_confirmed TR:Q19403 protein_id:CAA92120.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
PAP2 PAP2 superfamily 131.7 3e-36 1
MoaE MoaE protein 5.7 4.6 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
MoaE 1/1 150 164 .. 109 123 .] 5.7 4.6
PAP2 1/1 141 300 .. 1 174 [] 131.7 3e-36
Alignments of top-scoring domains:
MoaE: domain 1 of 1, from 150 to 164: score 5.7, E = 4.6
*->feAceyaIDelKkrv<-*
++Ac +a+++lK +v
F13E6.5 150 YAACTFAMEFLKCYV 164
PAP2: domain 1 of 1, from 141 to 300: score 131.7, E = 3e-36
*->taigvlllalllagllllllknaigrlrplflalclpllalllncsd
+ +ll+++++ ++ +lk+ +grlrp+f+ +c p+++ + c+d
F13E6.5 141 ITYLKYLLMYAACTFAMEFLKCYVGRLRPHFFSVCKPDWSKVD-CTD 186
.g.gllkelfnrprPfthqfddsllstlelvheggySFPSGHssfaaaaa
+++++ +++ ++ P++ ++++ ++ SFPSGH+++a+ ++
F13E6.5 187 kQsFIDSSDLVCTNPNP-----------RKIRTARTSFPSGHTAAAFHVF 225
galalllalrlrwrkSseSqlflsllrpllgllllllallvglSRvylgv
++++++l+++ ++++ ++ r +l++ ++l+ ++++++Rv + +
F13E6.5 226 LFVYIYLRRMAENTG----IKEIITIRNILVPSYALWTVFCAVTRVTDNW 271
HypsDVlaGallGilvallvlllvrrlrd<-*
H+p+DVl+G++l++++++ +++ + +
F13E6.5 272 HFPTDVLGGVILAVVFIIPAFYSSWTTTE 300