Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F13H8.2
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Query: F13H8.2 CE27127 beta transducin Trp-Asp domains status:Partially_confirmed TR:Q19433 protein_id:AAK31492.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Utp12 Dip2/Utp12 Family 358.1 9.6e-104 1
WD40 WD domain, G-beta repeat 233.1 3.9e-66 9
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
WD40 1/9 50 88 .. 1 39 [] 20.6 0.00047
WD40 2/9 93 131 .. 1 39 [] 39.4 2.1e-09
WD40 3/9 135 173 .. 1 39 [] 26.5 1e-05
WD40 4/9 407 436 .. 8 39 .] 17.2 0.0043
WD40 5/9 441 479 .. 1 39 [] 8.1 1.7
WD40 6/9 483 521 .. 1 39 [] 32.2 2.3e-07
WD40 7/9 576 614 .. 1 39 [] 39.5 1.9e-09
WD40 8/9 618 657 .. 1 39 [] 37.7 6.3e-09
WD40 9/9 661 699 .. 1 39 [] 25.1 2.4e-05
Utp12 1/1 717 925 .. 1 268 [] 358.1 9.6e-104
Alignments of top-scoring domains:
WD40: domain 1 of 9, from 50 to 88: score 20.6, E = 0.00047
*->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
e + ++ t+p++cv+ + + p+la g +Dg++kl++
F13H8.2 50 AEKVNEIiESTKPISCVRQCEN-KPLLAIGYADGSVKLFN 88
WD40: domain 2 of 9, from 93 to 131: score 39.4, E = 2.1e-09
*->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
+ ++gH+++v+c+ fs d g ++a+g+ Dg i lWd
F13H8.2 93 DSEPIMFsGHKKAVNCIEFSSD-GLLFATGGKDGVIVLWD 131
WD40: domain 3 of 9, from 135 to 173: score 26.5, E = 1e-05
*->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
l+gH+ +vt ++f+ ++++s S D ik W+
F13H8.2 135 ERGMFRLhGHKESVTQMKFVRG-DRFIISTSKDSLIKFWS 173
WD40: domain 4 of 9, from 407 to 436: score 17.2, E = 0.0043
*->gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
gH v+++++s + +++lasg+ + + +W+
F13H8.2 407 GHREDVRALCVSSS-SSLLASGGG-NEVIVWS 436
WD40: domain 5 of 9, from 441 to 479: score 8.1, E = 1.7
*->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
++ l+ + + + +v f+p +y+++g+ +g i +++
F13H8.2 441 RSSLTLTdNDIKDIVAVNFVPG-DNYILTGGKNGEIGVFE 479
WD40: domain 6 of 9, from 483 to 521: score 32.2, E = 2.3e-07
*->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
e++ t ++Ht++++ + spd + ++++S+D+t++ W+
F13H8.2 483 AELVETRkAHTGAIWTIQNSPD-NEGFITASADKTVRFWS 521
WD40: domain 7 of 9, from 576 to 614: score 39.5, E = 1.9e-09
*->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
+ +l+gH+ pvtcv+++p+ ++++++gS D+++k+W
F13H8.2 576 LKFFVSLyGHSLPVTCVDIAPS-SKLCVTGSVDKSVKVWG 614
WD40: domain 8 of 9, from 618 to 657: score 37.7, E = 6.3e-09
*->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
g+c +++++H ++vt+v f+p + +++ s++ Dg+ik Wd
F13H8.2 618 GDCHKSFhAHDDAVTSVLFCPGEEQLFWSAGKDGKIKQWD 657
WD40: domain 9 of 9, from 661 to 699: score 25.1, E = 2.4e-05
*->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
+++l+ Ht ++c+a + g++++s+S+D++i+ W+
F13H8.2 661 FIMVQVLdRHTLDIRCLAQFTN-GSVMFSASHDKSIRCWE 699
Utp12: domain 1 of 1, from 717 to 925: score 358.1, E = 9.6e-104
*->EeYEekLlaklddrdGdDafkadvdGeeeegeaalagKkTieslkAA
EeYE+kL+ +++d +++ Ge++++ea++a++kT++s+++A
F13H8.2 717 EEYEKKLI-EEED--------VVA-GENADNEAGVASSKTSSSVVSA 753
ErImEALdIgreEterekeYkedmkLWqllKqpGkeikPepnPiLvAlgs
E+I++A+dI+r+E+++++e +pG+e p+P+++A++s
F13H8.2 754 ENIIQAVDIARNEKVQRQE------------DPGHE----PHPLIGAYNS 787
kSpeeYvlstlkkIRaSdLedaLLvLPFSyVlklLkfieswlteKlTQlv
kS++++++++++k+RaSdL+++LL++P+SyV+++L +i+s+ TQ++
F13H8.2 788 KSLDHFIVDVVAKCRASDLDRTLLLVPLSYVADILLAISSC-----TQQQ 832
skvELicrvlffLlmmPArihhkqltRAAAiRGstkevklkplLeklrsk
+k+EL+++v+++L+ rih++++t ++ ++++p++e+++sk
F13H8.2 833 YKAELCTHVAVYLT----RIHLSHIT-------AS--SDYVPIFEQMKSK 869
LrselkelrdvlGfNlAGLkllkqelElrhnvkFfDeaeqqleiRSqqAK
+++++++lr+v+G+NlA+L+ll++elE+r++vk+f+++e+++e
F13H8.2 870 MSEGVEKLRNVTGINLAALRLLATELEDREQVKKFAQIELGVE------- 912
RmASRGDtekkkKRKkrsktl<-*
++kkKRK+r+++l
F13H8.2 913 --------DPKKKRKGRKAVL 925
[output cut off at A = 10 top alignments]