Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm2/seq/F14E5.4
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Query:  F14E5.4  CE03207   acid phosphatase status:Confirmed TR:Q19461 protein_id:CAA91407.1

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N
--------      -----------                               -----    ------- ---
acid_phosphat Histidine acid phosphatase                 30.4    1.4e-07   1
ANATO         Anaphylotoxin-like domain                   1.1          8   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
acid_phosphat   1/1      29   152 ..     7   182 ..    30.4  1.4e-07
ANATO           1/1     361   365 ..    33    37 .]     1.1        8

Alignments of top-scoring domains:
acid_phosphat: domain 1 of 1, from 29 to 152: score 30.4, E = 1.4e-07
                   *->qmlsRHGdRyPTgSkgatdvktIdkfkesaLngsipinltfpkdpla
                      q+l+RHG+R+P                        +++     +++a
     F14E5.4    29    QVLFRHGARAP------------------------SNS----LSDPA 47

                   flptWtddlPvekavgagqLTppYaGmlelvnlGryfrqRYvedgellnn
                    l   +         g+g+LT +  G +  ++lGr ++ RYv d ++ ++
     F14E5.4    48 YLANFP--------RGLGELTDR--GFENSFRLGRFLKTRYV-DSKFVDG 86

                   stpqkevyIrstsleRtidSAeaFiaGlFPPkGvDipnhvdqqaslqtip
                     ++ + y rs + +R + SA + +a++F    +D++ h         +p
     F14E5.4    87 NLKPRQMYWRSVNKNRCLSSASTVGAAMF----EDPSRHL-------YVP 125

                   ehevpgsndllaylplnsCpafeelaekw<-*
                   + +  + ++ll y+   +Cp+  el +k+
     F14E5.4   126 VLTEEIGENLLNYD-QANCPRELEL-IKE    152

ANATO: domain 1 of 1, from 361 to 365: score 1.1, E = 8
                   *->FlqCC<-*
                      Fl+CC
     F14E5.4   361    FLDCC    365



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