Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F14H8.1
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Query: F14H8.1 CE23653 oxysterol-binding protein status:Partially_confirmed TR:Q93485 protein_id:CAB02934.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Oxysterol_BP Oxysterol-binding protein 201.7 1.2e-56 2
Ran_BP1 RanBP1 domain 4.1 6.6 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Oxysterol_BP 1/2 28 98 .. 22 93 .. 46.6 5.8e-12
Ran_BP1 1/1 395 413 .. 109 127 .] 4.1 6.6
Oxysterol_BP 2/2 136 446 .. 97 440 .] 151.8 1.2e-41
Alignments of top-scoring domains:
Oxysterol_BP: domain 1 of 2, from 28 to 98: score 46.6, E = 5.8e-12
*->kdltrRldipeeslspisLwsisqlwvGkdLskitlPvfinEpkSmL
+ +tr l + + + +s w i + + Gkd s++t Pvf nEp+S L
F14H8.1 28 GQRTR-LPATYIAPEDVSIWDIIRPNLGKDFSRFTVPVFMNEPLSFL 73
qrvtedleYpelLdkAaaredsltr<-*
qr++e +Y lL kAa++ d +r
F14H8.1 74 QRLSENVQYNYLLEKAAKCSDDMER 98
Ran_BP1: domain 1 of 1, from 395 to 413: score 4.1, E = 6.6
*->KtkEeAdeFKkkFEeaqke<-*
++ +eA+eFK k Ee q+e
F14H8.1 395 GKNDEAEEFKHKYEEEQRE 413
Oxysterol_BP: domain 2 of 2, from 136 to 446: score 151.8, E = 1.2e-41
*->yvaastlssysettrrvkKPlNPlLGEtFelkrendElpnkgqyrll
yvaa+ l+ s +r++KP+NPlL EtFel r + r+l
F14H8.1 136 YVAAFALATVSANHKRLSKPFNPLLLETFELERN-----G---VRFL 174
sEQVSHHPPvsAffaespkskwrvqgevqikskFlGkslavmkeGltvht
+EQVSHHPP+sA +aes++ +v g+v ++ +F+ + l++++ + +
F14H8.1 175 AEQVSHHPPISAVYAESDE--FTVEGTVEPTLGFWMTKLLANPHAH-LKL 221
ildikdingkpEtYtwtqPnttveGILvGkpfvElSGdesvinsstGdkc
++ ++ EtY+w+ P + ++++Gk+++ ++ i ss + +
F14H8.1 222 TFKKTG-----ETYSWSAPKCAIYNVIMGKMYMNF-TSHMKIESSGTYDA 265
vIeFktkGyfS..GkkdsfkgrivkdpdgnkdKEkklytlsGkWndsmyi
v F+ kGy ++G+ ++g i+ g k+K k+ly G W+
F14H8.1 266 VFSFDNKGYYNhkGGDVHVEGHIF---EG-KNKIKALY---GNWTLFLAS 308
kKvqsksegelflDa..hktphealkvrpLeeqhelesrkaWkkvadalk
+ + + + +++ ++t e ++++ + s+ +W + +++
F14H8.1 309 CDNEDFKHHRKEYLRmfNETVSEKDQGPVVPG-----SKILWVSNQIPKL 353
...vgnltvftktkneleerqRpllkptesrgvedqralfkrledkedld
++++ +t ft+ +ne + +pt+sr++ d al+ + d
F14H8.1 354 fddQFHFTNFTLSLNEMYPGMSDTVAPTDSRRRKDMKALEDGKNDE---- 399
keekkekpeaddkerkqkgslyepkwfvpsgqpvtdKeklyikarkeyWe
+ee k+k e++++er++ p wf++ + ++ + + + yW
F14H8.1 400 AEEFKHKYEEEQRERRTTKTGDVPMWFAK-----N--DEGHWAYKGGYWD 442
frKk<-*
++
F14H8.1 443 RDYS 446