Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F15E6.6
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Query: F15E6.6 CE27966 xanthine dehydrogenase status:Partially_confirmed TR:O61198 protein_id:AAB92058.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Ald_Xan_dh_C2 Aldehyde oxidase and xanthine dehydroge 761.5 3.4e-225 1
Ald_Xan_dh_C Aldehyde oxidase and xanthine dehydroge 192.1 8.9e-54 1
fer2_2 [2Fe-2S] binding domain 166.8 2.5e-60 1
fer2 2Fe-2S iron-sulfur cluster binding doma 46.0 2.3e-11 1
FAD_binding_5 FAD binding domain in molybdopterin deh 14.5 0.009 1
S_layer_N S-layer like family, N-terminal region 7.5 0.58 1
SRP_SPB Signal peptide binding domain 5.2 2.3 1
GXGXG Domain of unknown function DUF14 3.8 6.5 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
fer2 1/1 8 79 .. 1 95 [] 46.0 2.3e-11
fer2_2 1/1 87 161 .. 1 86 [] 166.8 2.5e-60
GXGXG 1/1 217 245 .. 193 228 .] 3.8 6.5
FAD_binding_5 1/1 279 382 .. 57 167 .. 14.5 0.009
Ald_Xan_dh_C 1/1 528 641 .. 1 120 [] 192.1 8.9e-54
S_layer_N 1/1 807 823 .. 307 324 .] 7.5 0.58
SRP_SPB 1/1 847 864 .. 78 95 .. 5.2 2.3
Ald_Xan_dh_C2 1/1 643 1152 .. 1 609 [] 761.5 3.4e-225
Alignments of top-scoring domains:
fer2: domain 1 of 1, from 8 to 79: score 46.0, E = 2.3e-11
*->vtidGkgvtvevpdgettlLdaaene.aggidiPysCrgelpGgaCG
++++Gk++ e +d+e tl +++ +++g+ +++ +C++ G+ CG
F15E6.6 8 FNVNGKDIKEENVDPELTLAYYLR-NkLGLRGTKLGCEE---GV-CG 49
tCkvkvveGevdlgqsdleeqsflegeelakgyviegeSrLaCqtypks<
+C+ vv G++d ++ + y + ++aC +++
F15E6.6 50 SCT--VVLGTWD-------------DSLNKAVYSA----VNACLVPLFH 79
-*
F15E6.6 - -
fer2_2: domain 1 of 1, from 87 to 161: score 166.8, E = 2.5e-60
*->TvEGLgstkgrLHpvQeafakhhGlQCGFCTPGmiMsayaLLrnnps
TvEG+gs ++++Hp+Q+++a+ h++QCGFC+PG++MsayaLLrn+p+
F15E6.6 87 TVEGVGS-RDKIHPIQDRMARGHAVQCGFCSPGFVMSAYALLRNHPN 132
kssqpPPfpkltdeeirealaGNLCRCTGYrpIveAikd<-*
P t+e+i++a+ NLCRCTGYrpI+eA ++
F15E6.6 133 ------P----TIEQINAAIRANLCRCTGYRPILEALYS 161
GXGXG: domain 1 of 1, from 217 to 245: score 3.8, E = 6.5
*->lpgkvnleiVeledlkrievkrkdlLpegekqlkel<-*
+++ n+ + + + rie lLp++++q ke+
F15E6.6 217 FVDSENPVTLKGD---RIEL----LLPKSIEQFKEF 245
FAD_binding_5: domain 1 of 1, from 279 to 382: score 14.5, E = 0.009
*->ipELneirededgleiGAavtLsklievlreaieklPeekTqvfkal
++E+ne+ e+++ + iGAav ++k+ ++l + k +
F15E6.6 279 VKEFNEVIENPETVVIGAAVNIQKMSDILSRSL------SQNIGKEV 319
aehLrwfAGkQiRNvAsiGGNIatAspiqFP.SDlnPvLmAagAkLnlis
+ +f ++Qi N+A+ +G I+++ ++ SDl ++ +++AkL+l+
F15E6.6 320 DAFIKKFSSPQIANFATWTGGIVSGAKSSISvSDLLLLFNVLNAKLTLLT 369
ssggIerrvlmdeeF<-*
sg +++ +eeF
F15E6.6 370 DSGD--LTQVNIEEF 382
Ald_Xan_dh_C: domain 1 of 1, from 528 to 641: score 192.1, E = 8.9e-54
*->TGeAvYvdDipapgmlLylafVrSpkAHArIvsIDtsaAlalPGVva
TGeA Yv+Di++++ + +l fV+S+++HA+I+sID+++Al+l+GVv+
F15E6.6 528 TGEALYVNDIQTYNPV-HLGFVLSTVPHAEILSIDATEALKLEGVVG 573
ViTakDlpglnrgigptapnendepdtvdavlAddkVryvGqpVAaVvAd
++ a+D+pg n +++++++++++++ ++++Ad+kV++vGq+V++++A+
F15E6.6 574 FFGASDVPGNNSPGLQISNMNLPDD---ATIFADKKVESVGQVVGVIAAN 620
deetArdAAeLVkVeYeeLpppa<-*
d Ar+AA+LVk+eY+eLp a
F15E6.6 621 DVLLARRAAKLVKLEYKELP--A 641
S_layer_N: domain 1 of 1, from 807 to 823: score 7.5, E = 0.58
*->dtYdlGqevefdGYeVkI<-*
d Y++G v +dGY Vk
F15E6.6 807 DVYNMG-TVRYDGYPVKT 823
SRP_SPB: domain 1 of 1, from 847 to 864: score 5.2, E = 2.3
*->rrRIArGSGtsvqeVneL<-*
+rRIAr G s +eV++L
F15E6.6 847 MRRIAREVGKSTEEVKKL 864
Ald_Xan_dh_C2: domain 1 of 1, from 643 to 1152: score 761.5, E = 3.4e-225
*->vtiekAiepdApvvhdslfenvpGhgreilhertierGDkaveeafa
v++++Ai ++sl+++ r++ + +++v+e +
F15E6.6 643 VELKDAIV------AKSLLGK----------VRHFGKSEYLVNESLV 673
sAdhkilsaivvvegeyhlgrqehfymETqaalAvpdpedgeLtiysSTQ
+++ v+ege +lg+qehfy+ETq++l ++ ++++STQ
F15E6.6 674 HSYK-------VLEGESSLGSQEHFYLETQSSLNYR-------IVHCSTQ 709
aPhyvrtmvAkvLgipehkVrVivprvGGGFGGkkvfslslaliaALAAl
+ ++++ mvA +++ip+hk++V+++r+GG+FGGk ++++a+i+ + A+
F15E6.6 710 GTSFTQLMVAETMKIPAHKIIVKTKRMGGAFGGKLNNASWIACICSVVAK 759
klgRPVkwvldRdEdmiatggRHpfkikykvGakkDGkitAldvdvladg
kl+RP y vG ++DGk+++++++++++g
F15E6.6 760 KLNRPT----------------------YGVGINSDGKVQGIHHQAWLNG 787
GayadlsdpvveraglhagvclgvYkipniriegkavkTNlpsngvAfRC
G++ d++ +v++ +g+++ + vY+++++r++g+ vkTN++sn+ AfR
F15E6.6 788 GWSKDHTEGVTMVMGQFV---DDVYNMGTVRYDGYPVKTNTNSNT-AFR- 832
GfGgpqgmfAaErlidelArkLGiDplEiRrrNlytPEkegdttpfgqel
G+G pq+ +++E ++++Ar+ G++++E+ ++N++ +eg+ +++ +
F15E6.6 833 GYGNPQAKLVSEGVMRRIAREVGKSTEEVKKLNFA---FEGEKRYLSGNI 879
dsgnlpellecldecrkssefrkRrakearaaveksLfNrgnswrkrGig
+s++++e c+++c +s+f+kR+ + +e+ fN++++ +krGi+
F15E6.6 880 YSDAHIE---CWEYCTRWSDFEKRK-----ETIEN--FNKTSKIVKRGIA 919
lvptkygigfgapplnqagAlvrlytDGsVtvstGgteiGQGlhTkmaQi
++ ++ + ++ +pp ++ +A+++++ DGs+++s+Ggte+GQGl++km Q+
F15E6.6 920 MSSVRLALSHPGPP-GHGVASLMINLDGSIQLSIGGTEMGQGLNQKMLQV 968
aAeeLGmsGipledIrviegDTdkvpngsgTaaSrgtdmnGnAVrdAcek
++e+L + p++ I++++++Tdk++n++ T+aS+ +d+nG AV+++ce+
F15E6.6 969 CSEAL---KRPIDTITIVDCSTDKITNAPETGASHNADTNGLAVLACCER 1015
LrerLkpiaakmlesseeditwedgkvvvkgkivaaayvdsvslsAtgfy
++ rL+pi++k+ ++we+ +++ay+++v+l +t+++
F15E6.6 1016 IMSRLQPIIDKND------GDWEKS--------IRDAYGAYVPLQCTEYG 1051
atpgvtpptgfdpgteatgsygtpflyftYGaaavEVeVDclTGdvkvlr
++ ++++ g+ +++y+t Ga+avE+eVD++TG++++lr
F15E6.6 1052 SVD----REKLSIGE-------FEYPYNTTGACAVEMEVDTMTGYNRLLR 1090
tdivmDcGtslNPaideGQIeGgfvQGiGlalmEEivyddpgGnlltrsl
+divmD+G+slNPaid+GQIeG+f+QG+Gl+++E+i++++++G+l+++s
F15E6.6 1091 VDIVMDVGESLNPAIDIGQIEGAFMQGYGLVTCEKITFNKETGQLNQNSA 1140
gdYkIPtidDiP<-*
g+YkIP+ +D+P
F15E6.6 1141 GQYKIPKSSDVP 1152