Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F16A11.1
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: F16A11.1 CE17679 Zinc finger, C3HC4 type (RING finger) status:Partially_confirmed TR:P90839 protein_id:CAB04122.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
SPRY SPRY domain 113.2 2.9e-30 1
zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 7.1 0.14 2
SUI1 Translation initiation factor SUI1 5.7 2 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
SUI1 1/1 105 122 .. 78 95 .. 5.7 2
SPRY 1/1 392 519 .. 1 158 [] 113.2 2.9e-30
zf-C3HC4 1/2 564 588 .. 1 34 [. 12.6 0.0015
zf-C3HC4 2/2 594 598 .. 46 50 .] 0.5 33
Alignments of top-scoring domains:
SUI1: domain 1 of 1, from 105 to 122: score 5.7, E = 2
*->QGDqrdkvkefLlekgfk<-*
+GD+rd++ke+++e++ +
F16A11.1 105 NGDVRDDIKELIIETLEV 122
SPRY: domain 1 of 1, from 392 to 519: score 113.2, E = 2.9e-30
*->sGkhYfEVevdtgggegthwrvGwatksvhlpdgfdlrrskrkgges
G++Y+E +v t+g +++G+atk + ++ ++
F16A11.1 392 DGVWYYEATVLTSGV----MQIGLATKRS----------RFLNHEGY 424
llgdnegswgfdgsggkkyhagtsgedyglpfqepyasgdvIGcflDyea
++gd++ s ++dg+++ +++ +s+++ +++q gdvIG++l+ ++
F16A11.1 425 GIGDDASSVAYDGCRQLVWYNAKSHKHEHENWQP----GDVIGVLLNIPE 470
gVtisFtkNGkdLgdsEshiyaFr.nvtfgkdkeggplyPavslgsadgg
g ++ F++NG++L ++++ F +n ++ ++++ a s+ s
F16A11.1 471 G-EVVFYLNGTPLK---EPETEFLsNRQPS-----EGVFAAASFMS---- 507
geavrlnfgplp<-*
+ +r+nfg
F16A11.1 508 FQQCRFNFGASR 519
zf-C3HC4: domain 1 of 2, from 564 to 588: score 12.6, E = 0.0015
*->CrICleelkepsndfplilpCgHsGslkyfCrsC<-*
C IC+ + + +lpC+H G fC++C
F16A11.1 564 CTICFAAPGSTT-----LLPCNHDG----FCSDC 588
zf-C3HC4: domain 2 of 2, from 594 to 598: score 0.5, E = 33
*->kCplC<-*
+CplC
F16A11.1 594 HCPLC 598