Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm2/seq/F16A11.1
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Query:  F16A11.1  CE17679   Zinc finger, C3HC4 type (RING finger) status:Partially_confirmed TR:P90839 protein_id:CAB04122.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
SPRY     SPRY domain                                    113.2    2.9e-30   1
zf-C3HC4 Zinc finger, C3HC4 type (RING finger)            7.1       0.14   2
SUI1     Translation initiation factor SUI1               5.7          2   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SUI1       1/1     105   122 ..    78    95 ..     5.7        2
SPRY       1/1     392   519 ..     1   158 []   113.2  2.9e-30
zf-C3HC4   1/2     564   588 ..     1    34 [.    12.6   0.0015
zf-C3HC4   2/2     594   598 ..    46    50 .]     0.5       33

Alignments of top-scoring domains:
SUI1: domain 1 of 1, from 105 to 122: score 5.7, E = 2
                   *->QGDqrdkvkefLlekgfk<-*
                      +GD+rd++ke+++e++ +
    F16A11.1   105    NGDVRDDIKELIIETLEV    122

SPRY: domain 1 of 1, from 392 to 519: score 113.2, E = 2.9e-30
                   *->sGkhYfEVevdtgggegthwrvGwatksvhlpdgfdlrrskrkgges
                       G++Y+E +v t+g     +++G+atk +          ++  ++
    F16A11.1   392    DGVWYYEATVLTSGV----MQIGLATKRS----------RFLNHEGY 424

                   llgdnegswgfdgsggkkyhagtsgedyglpfqepyasgdvIGcflDyea
                   ++gd++ s ++dg+++  +++ +s+++  +++q     gdvIG++l+ ++
    F16A11.1   425 GIGDDASSVAYDGCRQLVWYNAKSHKHEHENWQP----GDVIGVLLNIPE 470

                   gVtisFtkNGkdLgdsEshiyaFr.nvtfgkdkeggplyPavslgsadgg
                   g ++ F++NG++L    ++++ F +n  ++     ++++ a s+ s
    F16A11.1   471 G-EVVFYLNGTPLK---EPETEFLsNRQPS-----EGVFAAASFMS---- 507

                   geavrlnfgplp<-*
                    + +r+nfg
    F16A11.1   508 FQQCRFNFGASR    519

zf-C3HC4: domain 1 of 2, from 564 to 588: score 12.6, E = 0.0015
                   *->CrICleelkepsndfplilpCgHsGslkyfCrsC<-*
                      C IC+  +   +     +lpC+H G    fC++C
    F16A11.1   564    CTICFAAPGSTT-----LLPCNHDG----FCSDC    588

zf-C3HC4: domain 2 of 2, from 594 to 598: score 0.5, E = 33
                   *->kCplC<-*
                      +CplC
    F16A11.1   594    HCPLC    598



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