Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F16D3.4
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Query: F16D3.4 CE09437 status:Partially_confirmed TR:Q19493 protein_id:CAB01496.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
B-tub_coD Beta-tubulin cofactor D 1788.2 0 1
Colicin_V Colicin V production protein 4.9 4.5 1
Nucleoporin2 Nucleoporin autopeptidase 3.7 4 1
ICMT Isoprenylcysteine carboxyl methyltransfe 3.7 6.9 1
perilipin Perilipin family 2.3 6 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Nucleoporin2 1/1 393 408 .. 173 188 .] 3.7 4
Colicin_V 1/1 471 503 .. 142 176 .] 4.9 4.5
ICMT 1/1 606 616 .. 237 247 .] 3.7 6.9
perilipin 1/1 813 831 .. 1 19 [. 2.3 6
B-tub_coD 1/1 106 978 .. 1 992 [] 1788.2 0
Alignments of top-scoring domains:
Nucleoporin2: domain 1 of 1, from 393 to 408: score 3.7, E = 4
*->GLldeeeeEededsks<-*
G ld+ ee de+s s
F16D3.4 393 GMLDDNEEYSDEPSFS 408
Colicin_V: domain 1 of 1, from 471 to 503: score 4.9, E = 4.5
*->llpiladqhwkllkeSvlapllsevipylsnllqn<-*
+lp++++ + + S+++ ++ ev++y+s ++ +
F16D3.4 471 RLPNFDLATQ--VVGSIISSHFGEVAEYSSWHSHG 503
ICMT: domain 1 of 1, from 606 to 616: score 3.7, E = 6.9
*->kkkVptGiPFI<-*
+k+V GiP+I
F16D3.4 606 QKNVSHGIPLI 616
perilipin: domain 1 of 1, from 813 to 831: score 2.3, E = 6
*->matAvedqpqqesvvdRvl<-*
m+ +++d ++ + v++Rv+
F16D3.4 813 MTYLMNDEELIQKVKTRVI 831
B-tub_coD: domain 1 of 1, from 106 to 978: score 1788.2, E = 0
*->LdsIldvslgqevsetsvEvkleryrkildkYQEQPhLLDphLeeiV
L++I+ +l++e++et++Ev+++ry+++l++YQEQP+LLD++++eiV
F16D3.4 106 LPIIF--KLENECDETAAEVNYLRYSRLLHLYQEQPRLLDKWIPEIV 150
pnLldivrkvtvidvskpdqiielvklifkiLYilckVRGYKvlvkllPh
+nL+d+v++++ idvskp+++++l+++++k+L++lc+VRG+K++v+llPh
F16D3.4 151 ANLVDLVTLIG-IDVSKPRAMTPLSRESLKYLSDLCIVRGSKTIVRLLPH 199
eVsdLeevLdLLekCHstnsvdrqnpssfsdwetrYilLLWLSilvlnPF
+V++L+++L++Le ++++s++sd+++r++lL+WL+i+v+nPF
F16D3.4 200 QVHLLDPLLQTLE---------YYETSQLSDHNQRNVLLMWLWIVVKNPF 240
dlsDrlDkt.slasAPttnddktqgvqdkddvmlrIlsiaekYlisspdi
dl+ r+D+t++ +d+v++rI+++a++Y+++++++
F16D3.4 241 DLR-RFDPTgD-----------------PDNVITRIMNVALHYMKWDWNS 272
nkeaAaLllsrflsRpDgldllllsFLdwlleslkaskltfkeniflllG
++++AaL+++++lsR+Dg++++ lsFL++ll+s+k t++en++lll+
F16D3.4 273 SQASAALVIAHCLSRTDGIPKV-LSFLSRLLDSIK----THHENKKLLLA 317
nLeaLsaILKhgkRedllpyadtvlenLtvlredllekknsLlrKllvKl
+L++L+aILKh++R++l+++++t++e+L++l+ +++ekk++L++K+lvK+
F16D3.4 318 DLILLLAILKHVDRRVLTGHIGTIHEQLSFLY-PIDEKKGGLICKCLVKV 366
vQRiGLvlLpprsaiSWrYsrgtrsLaenLddsteasdEPDsfsnkvNSN
vQRiGL++L+pr++ SW+Y+rg+r+L+++Ldd++e+sdEP sfsnkvNSN
F16D3.4 367 VQRIGLIALKPRTC-SWSYNRGKRLLEGMLDDNEEYSDEP-SFSNKVNSN 414
qSCNNeiplelqeeDDeeleVpeilEeiiEfLLsaLsdkDTvVRWSAAKG
qSCNNei++e+q++D++ele++ei+E++++++L+aLs++DT+VRWSAAKG
F16D3.4 415 QSCNNEIDKENQWNDGDELENSEIVEFALMHVLEALSHSDTAVRWSAAKG 464
lGRitsRLPkADPASFieLADqVigSviellfsecdsldpvENTVNiSiT
+GRit+RLP+ ++LA+qV+gS+i+++f+ +v+
F16D3.4 465 VGRITVRLPN------FDLATQVVGSIISSHFG------EVA-------- 494
edesW.lHGacLaLAELArRGLLlpslledvVPlIIekaLhYderrGqhs
e++sW++HGacLaLAELA+RG+Llpslled+VP++ e++L++++++G+h+
F16D3.4 495 EYSSWhSHGACLALAELAHRGVLLPSLLEDIVPAL-ELSLVFEDVMGRHQ 543
vGqhiRDAACYvvWAfaRaYepsdlkPQvlqsLaSaLLivAlFDrEvNcR
+G+++RDAACY+vWA++R+Yeps+++P +lq+LaSaLL++AlFDr+vN+R
F16D3.4 544 NGNQVRDAACYAVWALSRTYEPSMMAP-YLQRLASALLCGALFDRQVNLR 592
RAAsAALQEnVGRqgnSLALfphGIdlistaDYfsVtnrsncYldlcvki
RAAsAALQE+VGRq+n ++hGI+li+++DYf+Vtnr++cY++lcv++
F16D3.4 593 RAASAALQEMVGRQKN----VSHGIPLIQSVDYFAVTNRQKCYEHLCVPV 638
AqFeeYrspvidhLvtkkvsHWDekireLaAlaLhkLslkepenlaayvl
A++++Y++++++hL+tkkv+HWDekire+aA++L+k+s++++en++++++
F16D3.4 639 AEYSTYSAIILRHLITKKVVHWDEKIREQAAISLEKISEIRLENVSDDYY 688
pkLLdktlsqdlenRiSPFmRhGstLAlgeiilgLyslgFEndknfPkdi
+++Ld++l++++e+RiSPF+RhG++LA+g++i+gL+s+g +d+
F16D3.4 689 MEILDDFLKASCETRISPFLRHGYLLASGHLIKGLTSRG--------MDF 730
elsedlvqklnkilltfldkrlyrgnsGeLmriavslfieqislskaflq
++++++++++++il++f+d+ ++++G+L+r+++++fi+++s+sk++l+
F16D3.4 731 SSKQTEIAWIPHILWPFCDM---TTQPGALIRRTLCKFIQLVSASKKVLL 777
eefskseaivslqkeenLkdpseaIrqlavsavgelvltyLvqdeelleK
+e++kse++++l+ ++++dp+e+Ir+la++avge+v+tyL++deel++K
F16D3.4 778 LEKDKSEWLDVLL--QLITDPREIIRSLAKTAVGEFVMTYLMNDEELIQK 825
sdveltlrslahlsDeeekismgfiaallvlPlsnleaiseeilkklvri
+++++ +++++++sDe+e+i+mg+i+++l n+ea+++e++++l+++
F16D3.4 826 VKTRV-IAAMTKCSDESERIGMGMICESL-----NSEAVDYEMFESLCNT 869
sLtPvnsvdrdeeadveavkalRWCKLLLdikrtlasidltaavanvsvN
+LtP++s d+k++la++++++a++++svN
F16D3.4 870 ILTPTSS----------------------DAKWALARQQTVFALNRISVN 897
ssletFekiksgekvietLlkaldDYttdnrGDvGrwVReaAmkalskCt
ss+etF++i g+k++etL+ka++DYtt+++GD+Gr+VRea+m+a+s+
F16D3.4 898 SSTETFNRI--GQKCFETLYKAMTDYTTSANGDIGRFVREASMRAMST-- 943
YILCkkmEtYsEGDvkdkseplllsedvdkiisymlrqsaEkidrlR<-*
IL v++k+ep++l+e+v+k+++ym++qsaE+i+r+R
F16D3.4 944 -IL-----------VDAKTEPPFLDEHVIKSAKYMVQQSAERISRTR 978