Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm2/seq/F16D3.4
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Query:  F16D3.4  CE09437    status:Partially_confirmed TR:Q19493 protein_id:CAB01496.1

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N
--------     -----------                                -----    ------- ---
B-tub_coD    Beta-tubulin cofactor D                   1788.2          0   1
Colicin_V    Colicin V production protein                 4.9        4.5   1
Nucleoporin2 Nucleoporin autopeptidase                    3.7          4   1
ICMT         Isoprenylcysteine carboxyl methyltransfe     3.7        6.9   1
perilipin    Perilipin family                             2.3          6   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
Nucleoporin2   1/1     393   408 ..   173   188 .]     3.7        4
Colicin_V      1/1     471   503 ..   142   176 .]     4.9      4.5
ICMT           1/1     606   616 ..   237   247 .]     3.7      6.9
perilipin      1/1     813   831 ..     1    19 [.     2.3        6
B-tub_coD      1/1     106   978 ..     1   992 []  1788.2        0

Alignments of top-scoring domains:
Nucleoporin2: domain 1 of 1, from 393 to 408: score 3.7, E = 4
                   *->GLldeeeeEededsks<-*
                      G ld+ ee  de+s s
     F16D3.4   393    GMLDDNEEYSDEPSFS    408

Colicin_V: domain 1 of 1, from 471 to 503: score 4.9, E = 4.5
                   *->llpiladqhwkllkeSvlapllsevipylsnllqn<-*
                      +lp++++  +  +  S+++ ++ ev++y+s ++ +
     F16D3.4   471    RLPNFDLATQ--VVGSIISSHFGEVAEYSSWHSHG    503

ICMT: domain 1 of 1, from 606 to 616: score 3.7, E = 6.9
                   *->kkkVptGiPFI<-*
                      +k+V  GiP+I
     F16D3.4   606    QKNVSHGIPLI    616

perilipin: domain 1 of 1, from 813 to 831: score 2.3, E = 6
                   *->matAvedqpqqesvvdRvl<-*
                      m+ +++d ++ + v++Rv+
     F16D3.4   813    MTYLMNDEELIQKVKTRVI    831

B-tub_coD: domain 1 of 1, from 106 to 978: score 1788.2, E = 0
                   *->LdsIldvslgqevsetsvEvkleryrkildkYQEQPhLLDphLeeiV
                      L++I+  +l++e++et++Ev+++ry+++l++YQEQP+LLD++++eiV
     F16D3.4   106    LPIIF--KLENECDETAAEVNYLRYSRLLHLYQEQPRLLDKWIPEIV 150

                   pnLldivrkvtvidvskpdqiielvklifkiLYilckVRGYKvlvkllPh
                   +nL+d+v++++ idvskp+++++l+++++k+L++lc+VRG+K++v+llPh
     F16D3.4   151 ANLVDLVTLIG-IDVSKPRAMTPLSRESLKYLSDLCIVRGSKTIVRLLPH 199

                   eVsdLeevLdLLekCHstnsvdrqnpssfsdwetrYilLLWLSilvlnPF
                   +V++L+++L++Le         ++++s++sd+++r++lL+WL+i+v+nPF
     F16D3.4   200 QVHLLDPLLQTLE---------YYETSQLSDHNQRNVLLMWLWIVVKNPF 240

                   dlsDrlDkt.slasAPttnddktqgvqdkddvmlrIlsiaekYlisspdi
                   dl+ r+D+t++                 +d+v++rI+++a++Y+++++++
     F16D3.4   241 DLR-RFDPTgD-----------------PDNVITRIMNVALHYMKWDWNS 272

                   nkeaAaLllsrflsRpDgldllllsFLdwlleslkaskltfkeniflllG
                   ++++AaL+++++lsR+Dg++++ lsFL++ll+s+k    t++en++lll+
     F16D3.4   273 SQASAALVIAHCLSRTDGIPKV-LSFLSRLLDSIK----THHENKKLLLA 317

                   nLeaLsaILKhgkRedllpyadtvlenLtvlredllekknsLlrKllvKl
                   +L++L+aILKh++R++l+++++t++e+L++l+ +++ekk++L++K+lvK+
     F16D3.4   318 DLILLLAILKHVDRRVLTGHIGTIHEQLSFLY-PIDEKKGGLICKCLVKV 366

                   vQRiGLvlLpprsaiSWrYsrgtrsLaenLddsteasdEPDsfsnkvNSN
                   vQRiGL++L+pr++ SW+Y+rg+r+L+++Ldd++e+sdEP sfsnkvNSN
     F16D3.4   367 VQRIGLIALKPRTC-SWSYNRGKRLLEGMLDDNEEYSDEP-SFSNKVNSN 414

                   qSCNNeiplelqeeDDeeleVpeilEeiiEfLLsaLsdkDTvVRWSAAKG
                   qSCNNei++e+q++D++ele++ei+E++++++L+aLs++DT+VRWSAAKG
     F16D3.4   415 QSCNNEIDKENQWNDGDELENSEIVEFALMHVLEALSHSDTAVRWSAAKG 464

                   lGRitsRLPkADPASFieLADqVigSviellfsecdsldpvENTVNiSiT
                   +GRit+RLP+      ++LA+qV+gS+i+++f+      +v+
     F16D3.4   465 VGRITVRLPN------FDLATQVVGSIISSHFG------EVA-------- 494

                   edesW.lHGacLaLAELArRGLLlpslledvVPlIIekaLhYderrGqhs
                   e++sW++HGacLaLAELA+RG+Llpslled+VP++ e++L++++++G+h+
     F16D3.4   495 EYSSWhSHGACLALAELAHRGVLLPSLLEDIVPAL-ELSLVFEDVMGRHQ 543

                   vGqhiRDAACYvvWAfaRaYepsdlkPQvlqsLaSaLLivAlFDrEvNcR
                   +G+++RDAACY+vWA++R+Yeps+++P +lq+LaSaLL++AlFDr+vN+R
     F16D3.4   544 NGNQVRDAACYAVWALSRTYEPSMMAP-YLQRLASALLCGALFDRQVNLR 592

                   RAAsAALQEnVGRqgnSLALfphGIdlistaDYfsVtnrsncYldlcvki
                   RAAsAALQE+VGRq+n    ++hGI+li+++DYf+Vtnr++cY++lcv++
     F16D3.4   593 RAASAALQEMVGRQKN----VSHGIPLIQSVDYFAVTNRQKCYEHLCVPV 638

                   AqFeeYrspvidhLvtkkvsHWDekireLaAlaLhkLslkepenlaayvl
                   A++++Y++++++hL+tkkv+HWDekire+aA++L+k+s++++en++++++
     F16D3.4   639 AEYSTYSAIILRHLITKKVVHWDEKIREQAAISLEKISEIRLENVSDDYY 688

                   pkLLdktlsqdlenRiSPFmRhGstLAlgeiilgLyslgFEndknfPkdi
                   +++Ld++l++++e+RiSPF+RhG++LA+g++i+gL+s+g        +d+
     F16D3.4   689 MEILDDFLKASCETRISPFLRHGYLLASGHLIKGLTSRG--------MDF 730

                   elsedlvqklnkilltfldkrlyrgnsGeLmriavslfieqislskaflq
                   ++++++++++++il++f+d+   ++++G+L+r+++++fi+++s+sk++l+
     F16D3.4   731 SSKQTEIAWIPHILWPFCDM---TTQPGALIRRTLCKFIQLVSASKKVLL 777

                   eefskseaivslqkeenLkdpseaIrqlavsavgelvltyLvqdeelleK
                   +e++kse++++l+  ++++dp+e+Ir+la++avge+v+tyL++deel++K
     F16D3.4   778 LEKDKSEWLDVLL--QLITDPREIIRSLAKTAVGEFVMTYLMNDEELIQK 825

                   sdveltlrslahlsDeeekismgfiaallvlPlsnleaiseeilkklvri
                   +++++ +++++++sDe+e+i+mg+i+++l     n+ea+++e++++l+++
     F16D3.4   826 VKTRV-IAAMTKCSDESERIGMGMICESL-----NSEAVDYEMFESLCNT 869

                   sLtPvnsvdrdeeadveavkalRWCKLLLdikrtlasidltaavanvsvN
                   +LtP++s                      d+k++la++++++a++++svN
     F16D3.4   870 ILTPTSS----------------------DAKWALARQQTVFALNRISVN 897

                   ssletFekiksgekvietLlkaldDYttdnrGDvGrwVReaAmkalskCt
                   ss+etF++i  g+k++etL+ka++DYtt+++GD+Gr+VRea+m+a+s+
     F16D3.4   898 SSTETFNRI--GQKCFETLYKAMTDYTTSANGDIGRFVREASMRAMST-- 943

                   YILCkkmEtYsEGDvkdkseplllsedvdkiisymlrqsaEkidrlR<-*
                    IL           v++k+ep++l+e+v+k+++ym++qsaE+i+r+R
     F16D3.4   944 -IL-----------VDAKTEPPFLDEHVIKSAKYMVQQSAERISRTR    978



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