hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm2/seq/F17A9.4
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Query:  F17A9.4  CE09448    status:Partially_confirmed TR:O16214 protein_id:AAB65281.1

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N
--------     -----------                                -----    ------- ---
oxidored_FMN NADH:flavin oxidoreductase / NADH oxidas   145.8      6e-44   1
Gag_p24      gag gene protein p24 (core nucleocapsid      5.2        3.8   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
Gag_p24        1/1     329   344 ..     1    17 [.     5.2      3.8
oxidored_FMN   1/1     116   370 ..    92   371 .]   145.8    6e-44

Alignments of top-scoring domains:
Gag_p24: domain 1 of 1, from 329 to 344: score 5.2, E = 3.8
                   *->pktLkelkkaveqyGpg<-*
                      ++t+k++++a+e+ G++
     F17A9.4   329    FRTVKAMVEAIEN-GAT    344

oxidored_FMN: domain 1 of 1, from 116 to 370: score 145.8, E = 6e-44
                   *->HenGskigvQlwhlGreakaeyledapkleKvlrvdgpsdpvnldeq
                      ++ G++++vQl h+Gr+++    + +          ++sd+   +e
     F17A9.4   116    KQDGALAVVQLSHGGRQTPITVEPNPW---------SASDVKLSGER 153

                   lsslakesgnelYiareLtkeeIk.eiiqeFvdAAkrAveiAGfDgVEiH
                      +    g +    + L+ e Ik++ii+ Fv AAk A e  GfDgVE+H
     F17A9.4   154 ---RFTAFGQP----VPLSTEQIKtQIIDRFVYAAKFAYE-TGFDGVELH 195

                   gAhGYLldqFLsPgsNkRtDeYGcGSlENRaRFpLEvvdaVkeavGedrp
                   gAhGYLl qF sP +NkRtD+YG GS+ENR R  LE+ da++  ++e
     F17A9.4   196 GAHGYLLAQFTSPTTNKRTDQYG-GSIENRQRIILEIYDAIRAEIPEST- 243

                   GAFLigyRlSpdevveggntlaEtivvaqfaylleelgvrvldgsrlayi
                     F++g+     e+ e+g+t+ ++   +   ++ e  g +++ +s+++y
     F17A9.4   244 -GFMVGIKTNSVEFQEQGTTVDDA---KVMCQVYEDKGFDFVELSGGTYE 289

                   haiep.rvtppfpvevggdqeientefikkvwkiP.vitVGrindpePFk
                    ++  + ++  +++e++  +  e +e+i+ v k+  v+ +G++++
     F17A9.4   290 KLAFHhMRDSTRNREAF--FL-EFAEKIRPVFKKTvVYLTGGFRTVK--A 334

                   aaeivaegradLVamGRpflADPdLvkKakeGrpde<-*
                   + e++++g   +++ GRp++A PdL+kK+ eG+
     F17A9.4   335 MVEAIENGATQGIGLGRPITAEPDLPKKIIEGLVAS    370

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