Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F17C11.8
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Query: F17C11.8 CE05655 status:Partially_confirmed TR:Q19519 protein_id:CAA96630.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Vps36 Vacuolar protein sorting 36 608.1 5.2e-179 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Vps36 1/1 173 430 .] 1 286 [] 608.1 5.2e-179
Alignments of top-scoring domains:
Vps36: domain 1 of 1, from 173 to 430: score 608.1, E = 5.2e-179
*->lrereWerlsksestkvkrasspvleglydregrlRkmvGIaGIERk
+r+++W+r+s+++s++++rass+ lR +vGI+GIER+
F17C11.8 173 VRRKTWQRSSSGSSSSGSRASSN-----------LR-SVGISGIERR 207
leeqlkkTdktiveAFqDLsaLMskAKeMVsLsksiaeKirsAPskkGei
l+e+++kT++ti++AF+D+s+LM++A+eMV+Lsksi+eK+r s+kGei
F17C11.8 208 LAENHQKTHETITQAFDDMSKLMETAREMVALSKSISEKVR---SRKGEI 254
sdDEtirfKsEmqqyllSLGildPVTkdnfgvSaNSslYfqeLaKqisev
s+DEti+fKs yllSLG++dPVTk++f++S+ s+Yfq+LaK+is+v
F17C11.8 255 SEDETIAFKS----YLLSLGVSDPVTKSTFVGSD--SEYFQKLAKEISDV 298
LrtpLeedGGmvsLTdvYcrvNRARGmELlSPeDlvnACelleslevPir
L+++++e+GGm++L++vYcr+NRARGmELlSPeD++nAC++l+++++P++
F17C11.8 299 LYEHIKENGGMCALPEVYCRINRARGMELLSPEDVMNACGALSRINSPLE 348
LrkFdSGvmViQLkShsdeevvlsaleeVskketlRvGvtAeelAkrLgi
L++F+SGv+V+QLkS+s++++v+++le+Vsk+e++ +A+elA++Lgi
F17C11.8 349 LHRFPSGVLVVQLKSASMDSTVGQTLEFVSKLERA----SANELAESLGI 394
SvllAkERLLqAEkkGliCRDdSvEGGSSLrFYpNlFme<-*
+v+lA+ERLL+AE++GliCRDdS+EG L+FYpN+Fme
F17C11.8 395 TVILARERLLAAEESGLICRDDSIEG---LLFYPNRFME 430