Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F17C8.3
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Query: F17C8.3 CE00957 status:Partially_confirmed TR:Q19527 protein_id:CAA84799.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
DUF108 Domain of unknown function DUF108 598.3 4.5e-176 1
GFO_IDH_MocA Oxidoreductase family, NAD-binding Rossm 19.1 0.00049 1
FecCD FecCD transport family 4.5 3.4 1
P5CR Delta 1-pyrroline-5-carboxylate reductas 3.4 6.5 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
FecCD 1/1 7 18 .. 52 63 .. 4.5 3.4
P5CR 1/1 448 464 .. 1 20 [. 3.4 6.5
GFO_IDH_MocA 1/1 448 482 .. 1 38 [. 19.1 0.00049
DUF108 1/1 448 709 .. 1 271 [] 598.3 4.5e-176
Alignments of top-scoring domains:
FecCD: domain 1 of 1, from 7 to 18: score 4.5, E = 3.4
*->AVaGAilQgltR<-*
AV+GA++Q+l+R
F17C8.3 7 AVSGALFQHLFR 18
P5CR: domain 1 of 1, from 448 to 464: score 3.4, E = 6.5
*->mkiGFIGaGnMaeayNdile<-*
++GFIG+G ++ ++e
F17C8.3 448 LRVGFIGYGHLGKF---LVE 464
GFO_IDH_MocA: domain 1 of 1, from 448 to 482: score 19.1, E = 0.00049
*->lrvGvvGtGrrlagrrHapallelpdriaelvavadrd<-*
lrvG++G+G g+++++ l+ lp+ +e+v ++ r+
F17C8.3 448 LRVGFIGYGH--LGKFLVEKLRLLPEE-FEIVKIWNRS 482
DUF108: domain 1 of 1, from 448 to 709: score 598.3, E = 4.5e-176
*->lrVGiiGyGAIGkFlteklrdgtvenvkIaaiyDRsvekaktLaemV
lrVG+iGyG++GkFl+eklr++++e ++I++i++Rsv++++ V
F17C8.3 448 LRVGFIGYGHLGKFLVEKLRLLPEE-FEIVKIWNRSVGEPG-----V 488
qGkiletiddllkedlDLVVEAASpkAVkDyaEkILeagkDllvmSvGAl
qG let+++++++d+DLVVE+A+pk+++Dy+E+ILe+ +Dl+++S++++
F17C8.3 489 QG--LETLTAENLKDIDLVVEVAHPKIIADYGELILEH-CDLFAGSPTCF 535
ADkeLlekLreLakstGrkiyiPSGAIgGLNDaiKaAslGeIEevvLtTr
A++eLlekL++L++s+G+k++iP+GA++G+ND++K+A++G+++++++t++
F17C8.3 536 ANQELLEKLTKLSLSHGKKLLIPAGALWGANDIQKMADVGSLKGLTVTMI 585
KpptslklgsrslGikeeekkeevNETVlyEGsvseAvkkFPkNiNVaAt
K+pts+klgs++++i+e++k+ee+NETVlyEGsv+++++++P+N+N++A+
F17C8.3 586 KHPTSFKLGSPLFEINEKAKLEETNETVLYEGSVRGLCPLAPNNVNTMAG 635
LSlAaeNLGFkdVKVklvADPKevdeNvHEvlVrGdfGelkitvrNvPak
++lAa+NLGF++VK+kl++DPK++d++v+Ev+V+Gd+G+++it+rN+Pak
F17C8.3 636 GALAASNLGFDEVKAKLISDPKMTDWHVVEVRVEGDDGFEVITRRNNPAK 685
eNPkTSilAAySvirllrnLkEnv<-*
++++T+i++++Svi++++nLk+n+
F17C8.3 686 PGAVTEISVLKSVILDFSNLKTNS 709