Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F17C8.1
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Query: F17C8.1 CE00955 locus:acy-1 adenylate cyclase status:Partially_confirmed TR:Q19523 protein_id:CAA84795.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
guanylate_cyc Adenylate and Guanylate cyclase cataly 432.9 2.8e-126 2
DUF395 YeeE/YedE family (DUF395) 5.8 4.4 1
chloroa_b-bind Chlorophyll A-B binding protein 4.3 4.4 1
Gpi1 N-acetylglucosaminyl transferase compo 3.7 7 1
Chitin_synth_2 Chitin synthase 2.3 4.3 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
chloroa_b-bind 1/1 106 119 .. 187 200 .] 4.3 4.4
Chitin_synth_2 1/1 106 137 .. 1 32 [. 2.3 4.3
guanylate_cyc 1/2 310 503 .. 1 226 [] 241.9 9.2e-69
DUF395 1/1 775 799 .. 41 65 .] 5.8 4.4
Gpi1 1/1 969 1004 .. 5 40 .. 3.7 7
guanylate_cyc 2/2 1040 1235 .. 1 226 [] 195.0 1.2e-54
Alignments of top-scoring domains:
chloroa_b-bind: domain 1 of 1, from 106 to 119: score 4.3, E = 4.4
*->LAMlAilGfavQel<-*
+AM+A+ ++a+Q++
F17C8.1 106 FAMFAFTACAAQYQ 119
Chitin_synth_2: domain 1 of 1, from 106 to 137: score 2.3, E = 4.3
*->pspiihkfvvaqplgtynpfgfplahtiClVT<-*
+ +++ + +aq y+p f+ + iClVT
F17C8.1 106 FAMFAFTACAAQYQRFYMPTSFLCTFLICLVT 137
guanylate_cyc: domain 1 of 2, from 310 to 503: score 241.9, E = 9.2e-69
*->vyaerydeVtilFaDIvgFTalssrhssNngPeevvrlLNelftrFD
+ + +V+ilFaDI+gFT +ss++s + e+v+lLN+lf+rFD
F17C8.1 310 FTMNLMTNVSILFADIAGFTKMSSNKS----ADELVNLLNDLFGRFD 352
elvdehkfgvyKiKTiGDaYMaasGlppaakakqtssKlaeeldedsaaH
+l++ + g +Ki T+GD+Y++++G+p++ + +H
F17C8.1 353 TLCRLR--GLEKISTLGDCYYCVAGCPEP-----------------CDDH 383
aakladfALamvealqevnvghteggpPlvLyrglqlRiGIHtGpVvaGv
a++ ++++L+m+ a++++ + + + +++R+GIHtG V +G
F17C8.1 384 ACRTVEMGLDMIVAIRQFDIDRGQ--E-------VNMRVGIHTGKVMCGM 424
iGgaskrprYdvwGdTVNvASRmEStGvpgekIhVsestyrlLkelesfq
+G +kr+++dv++++V++A+ mES Gv+g ++hVse+t+ lLk+l++ +
F17C8.1 425 VG--TKRFKFDVFSNDVTLANEMESSGVAG-RVHVSEATAKLLKGLYEIE 471
fefaleprg..........evsvkGkgkpGaietYfLkg<-*
++ +++++ + + +++e++vk + ++t+f+kg
F17C8.1 472 EGP---DYDgplrmqvqgtERRVKPES----MKTFFIKG 503
DUF395: domain 1 of 1, from 775 to 799: score 5.8, E = 4.4
*->lssivfllamllGawltalvilrlp<-*
+ +iv++l +++++++++ ++++p
F17C8.1 775 IDIIVATLIFVISGAVAIMSVRPFP 799
Gpi1: domain 1 of 1, from 969 to 1004: score 3.7, E = 7
*->tlsllliDvaLGilLglwLlgreNvehlvsaledva<-*
+++ ll+Dv+L+i L ++L + + + s++ dv+
F17C8.1 969 FIWELLLDVILSIVLVAFLNYQFETAFRMSFFGDVQ 1004
guanylate_cyc: domain 2 of 2, from 1040 to 1235: score 195.0, E = 1.2e-54
*->vyaerydeVtilFaDIvgFTalssrhssNngPeevvrlLNelftrFD
y+e ++ V++lFa+I + ++++++ +g+ e +r+LNe++++FD
F17C8.1 1040 KYSENHETVGVLFASITNWNDMYEENF--EGGREFLRVLNEVIGDFD 1084
elvdehkf.gvyKiKTiGDaYMaasGlppaakakqtssKlaeeldedsaa
el+d++ f++++KiKTiG aYMaasGl p+ ++ + +
F17C8.1 1085 ELLDRPDFtHIEKIKTIGPAYMAASGLNPE----------RKKNMLHPKE 1124
HaakladfALamvealqevnvghteggpPlvLyrglqlRiGIHtGpVvaG
H+++++dfALa++ l+ +n+ ++ + + G++ GpV aG
F17C8.1 1125 HLYQMVDFALAVQHVLSVFNEDLLN-FD-------FVCKLGLNIGPVTAG 1166
viGgaskrprYdvwGdTVNvASRmEStGvpgekIhVsestyrlLkelesf
viG + ++ Yd+wGdTVN ASRm StGv + +I+Vs+ t ++L +++
F17C8.1 1167 VIG--TTKLYYDIWGDTVNIASRMYSTGVLN-RIQVSQHTREYLLDRY-- 1211
qfefaleprgevsvkGkgkpGaietYfLkg<-*
+fef r+ ++vkG + G + tY+L+g
F17C8.1 1212 EFEF----RDHIEVKGID--GGMDTYLLVG 1235