Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm2/seq/F17C8.3
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Query:  F17C8.3  CE00957    status:Partially_confirmed TR:Q19527 protein_id:CAA84799.1

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N
--------     -----------                                -----    ------- ---
DUF108       Domain of unknown function DUF108          598.3   4.5e-176   1
GFO_IDH_MocA Oxidoreductase family, NAD-binding Rossm    19.1    0.00049   1
FecCD        FecCD transport family                       4.5        3.4   1
P5CR         Delta 1-pyrroline-5-carboxylate reductas     3.4        6.5   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
FecCD          1/1       7    18 ..    52    63 ..     4.5      3.4
P5CR           1/1     448   464 ..     1    20 [.     3.4      6.5
GFO_IDH_MocA   1/1     448   482 ..     1    38 [.    19.1  0.00049
DUF108         1/1     448   709 ..     1   271 []   598.3 4.5e-176

Alignments of top-scoring domains:
FecCD: domain 1 of 1, from 7 to 18: score 4.5, E = 3.4
                   *->AVaGAilQgltR<-*
                      AV+GA++Q+l+R
     F17C8.3     7    AVSGALFQHLFR    18

P5CR: domain 1 of 1, from 448 to 464: score 3.4, E = 6.5
                   *->mkiGFIGaGnMaeayNdile<-*
                       ++GFIG+G ++     ++e
     F17C8.3   448    LRVGFIGYGHLGKF---LVE    464

GFO_IDH_MocA: domain 1 of 1, from 448 to 482: score 19.1, E = 0.00049
                   *->lrvGvvGtGrrlagrrHapallelpdriaelvavadrd<-*
                      lrvG++G+G    g+++++ l+ lp+  +e+v ++ r+
     F17C8.3   448    LRVGFIGYGH--LGKFLVEKLRLLPEE-FEIVKIWNRS    482

DUF108: domain 1 of 1, from 448 to 709: score 598.3, E = 4.5e-176
                   *->lrVGiiGyGAIGkFlteklrdgtvenvkIaaiyDRsvekaktLaemV
                      lrVG+iGyG++GkFl+eklr++++e ++I++i++Rsv++++     V
     F17C8.3   448    LRVGFIGYGHLGKFLVEKLRLLPEE-FEIVKIWNRSVGEPG-----V 488

                   qGkiletiddllkedlDLVVEAASpkAVkDyaEkILeagkDllvmSvGAl
                   qG  let+++++++d+DLVVE+A+pk+++Dy+E+ILe+ +Dl+++S++++
     F17C8.3   489 QG--LETLTAENLKDIDLVVEVAHPKIIADYGELILEH-CDLFAGSPTCF 535

                   ADkeLlekLreLakstGrkiyiPSGAIgGLNDaiKaAslGeIEevvLtTr
                   A++eLlekL++L++s+G+k++iP+GA++G+ND++K+A++G+++++++t++
     F17C8.3   536 ANQELLEKLTKLSLSHGKKLLIPAGALWGANDIQKMADVGSLKGLTVTMI 585

                   KpptslklgsrslGikeeekkeevNETVlyEGsvseAvkkFPkNiNVaAt
                   K+pts+klgs++++i+e++k+ee+NETVlyEGsv+++++++P+N+N++A+
     F17C8.3   586 KHPTSFKLGSPLFEINEKAKLEETNETVLYEGSVRGLCPLAPNNVNTMAG 635

                   LSlAaeNLGFkdVKVklvADPKevdeNvHEvlVrGdfGelkitvrNvPak
                   ++lAa+NLGF++VK+kl++DPK++d++v+Ev+V+Gd+G+++it+rN+Pak
     F17C8.3   636 GALAASNLGFDEVKAKLISDPKMTDWHVVEVRVEGDDGFEVITRRNNPAK 685

                   eNPkTSilAAySvirllrnLkEnv<-*
                   ++++T+i++++Svi++++nLk+n+
     F17C8.3   686 PGAVTEISVLKSVILDFSNLKTNS    709



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