hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm2/seq/F18A12.6
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Query:  F18A12.6  CE09459   peptidase status:Partially_confirmed TR:O16790 protein_id:AAB66078.1

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N
--------      -----------                               -----    ------- ---
Peptidase_M13 Peptidase family M13                      215.6    1.7e-66   1
PhoU          PhoU family                                 6.5        1.8   1
Vault         Major Vault Protein repeat                  6.3        2.2   1
C1q           C1q domain                                  4.3        9.2   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
Vault           1/1     361   385 ..     1    28 [.     6.3      2.2
C1q             1/1     478   490 ..   125   137 .]     4.3      9.2
PhoU            1/1     561   590 ..    17    47 ..     6.5      1.8
Peptidase_M13   1/1     451   648 ..     1   222 []   215.6  1.7e-66

Alignments of top-scoring domains:
Vault: domain 1 of 1, from 361 to 385: score 6.3, E = 2.2
                   *->ewlvvgpgaetYlPqvpeeVvekPvpai<-*
                       +++++ +   ++P v+ +V+ k v+ai
    F18A12.6   361    LEMIRESD--SFTPSVKKRVLKK-VEAI    385

C1q: domain 1 of 1, from 478 to 490: score 4.3, E = 9.2
                   *->gegvhSvFSGFLl<-*
                      +e+v+ +F GFL+
    F18A12.6   478    PEYVNLIFTGFLI    490

PhoU: domain 1 of 1, from 561 to 590: score 6.5, E = 1.8
                   *->eAlaerDenelAeevieelDdeiDdlyeqie<-*
                      +A+ ++D+ ++ +++i ++D+ +D+ly++i+
    F18A12.6   561    RAFKKMDL-SKMQKLIGFEDKNLDQLYFRIQ    590

Peptidase_M13: domain 1 of 1, from 451 to 648: score 215.6, E = 1.7e-66
                   *->NAyynpefNsitfpagilvpPffdltyPravnskyGgiGfVlgHEig
                      NA y+  +N +t +a +l++Pffd tyP++vn  +  +Gf +gHE g
    F18A12.6   451    NAHYDSKDNALTVLAPFLDDPFFDSTYPEYVN--LIFTGFLIGHEFG 495

                   HgFDdqGiqldeeGsLadcwnlrdWkwtdednkcfqdrvkclidqyseav
                   H  D   ++ +            +W  ++ed++++++r++clidqy++++
    F18A12.6   496 HSID---PKILRRD---------GW-YKTEDMTEYGKRAQCLIDQYDNYD 532

                   kPddkgwfnncankGattlgEniADlgGlraAlkaykkkssdeereeqrl
                   +Pd  g+++n    G+++ gE+++D  G  + ++a+kk ++++    q+l
    F18A12.6   533 DPDH-GKQMN----GTYCIGEIVGDWVGRDVTWRAFKKMDLSKM---QKL 574

                   pgLenftpdQLfFetyAyswCrksrpenslrpllvdpHsPnelRvNgavr
                   +g+e+ + dQL+F+   +++C  +r  +sl +ll+dpH++  +RvNg+++
    F18A12.6   575 IGFEDKNLDQLYFRIQSLFFCG-PRSMKSLEQLLSDPHPTEVFRVNGIYS 623

                   nmPaFasaFnCkpGdkMfpepekrc<-*
                   nmP+Fa+aFnC+ G++M+pe+++++
    F18A12.6   624 NMPQFAKAFNCPIGSPMNPEKKCKM    648

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