Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F18E3.7
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: F18E3.7 CE07083 D-amino acid oxidase status:Partially_confirmed SW:Q19564 protein_id:AAK18939.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
DAO FAD dependent oxidoreductase 447.6 1.1e-130 1
S_layer_C S-layer like family, C-terminal region 2.8 7.2 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
S_layer_C 1/1 245 270 .. 91 116 .. 2.8 7.2
DAO 1/1 6 333 .. 1 397 [] 447.6 1.1e-130
Alignments of top-scoring domains:
S_layer_C: domain 1 of 1, from 245 to 270: score 2.8, E = 7.2
*->lkLDDEDkeDKLkaYfsmDPlEReyk<-*
l++ DED++D Lk Y+++ P Re k
F18E3.7 245 LEITDEDRNDILKRYIALHPGMREPK 270
DAO: domain 1 of 1, from 6 to 333: score 447.6, E = 1.1e-130
*->mdvvVIGgGViGlgtAldlalrGqgtlkvalvevrdladgtSsrsts
++++IG+GViG+++Al+++ ++++ ++++l+d+++++s+s
F18E3.7 6 PKIAIIGEGVIGCTSALQIS------KAIPNAKITVLHDKPFKKSCS 46
lvhGGlrylelgdeeefklareslrereiLletlaphlvtpvrmllpllp
+ +Gl+++++ ee+++++r s++++ +L++t ++++t+v++++++++
F18E3.7 47 AGPAGLFRIDY--EENTEYGRASFAWFSHLYRT-TKGSETGVKLVSGHIQ 93
slgdrlayeeaqlageflydflagfverklpssedLslseplelfPalkr
+d+l+ ++ ++++++d++++f r+l+ +e + ++fP++
F18E3.7 94 --SDNLESLKQ--QQRAYGDIVYNF--RFLDDRE---RL---DIFPEP-- 129
dgLkGGleyvdGlvvddarlvetnaylaalagalmktgvevknLlkekrk
++++ ++++a+ +e+n+y+++l++ l+++++e+k+ ++
F18E3.7 130 --------SKHC-IHYTAYASEGNKYVPYLKNLLLEQKIEFKQ-----QE 165
vtgkVeaeDleegaefsvgsradvvVNATGlwadelagdd..lksaikir
vt+ l+++a+ + ++dv+VN++Gl++++lagdd++++
F18E3.7 166 VTS------LDAVAD--A--GYDVIVNCAGLYGGKLAGDDdtCY------ 199
rigePirGqhlvVdapwkkhfiysldpetedgrvvyiiPreggkviiGtT
PirG++l+Vdapw+khf y+ ++ +++iP+e+ v++G T
F18E3.7 200 ----PIRGVILEVDAPWHKHFNYR-------DFTTFTIPKEH-SVVVGST 237
dqpgnwdledpspteediqdILkrvnellsapqlkradvlreyaGlRPlr
+q+++wd ++t+ed++dILkr+++l+ p++++ ++++e++ lRP+r
F18E3.7 238 KQDNRWD---LEITDEDRNDILKRYIALH--PGMREPKIIKEWSALRPGR 282
pdeRlekdrksesagtrgevllvHnyghgsnGliliwGgaltayrlvaed
+++R+e+ +k+ s+g+++ +++vH+yghgsnG++l+wG+a++a +lv+ +
F18E3.7 283 KHVRIEA-QKRTSVGNSKDYMVVHHYGHGSNGFTLGWGTAIEATKLVKTA 331
lv<-*
l
F18E3.7 332 LG 333