Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F18E9.5a
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Query: F18E9.5a CE30957 status:Partially_confirmed TR:Q19565 protein_id:AAM54190.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
jmjC jmjC domain 159.6 3.1e-45 1
DiHfolate_red Dihydrofolate reductase 8.3 0.24 1
E2F_TDP Transcription factor E2F/dimerisation p 4.8 2.6 1
DEAD DEAD/DEAH box helicase 2.6 8.3 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
E2F_TDP 1/1 254 287 .. 216 250 .] 4.8 2.6
DEAD 1/1 333 378 .. 172 207 .] 2.6 8.3
jmjC 1/1 757 865 .. 1 126 [] 159.6 3.1e-45
DiHfolate_red 1/1 873 893 .. 1 22 [. 8.3 0.24
Alignments of top-scoring domains:
E2F_TDP: domain 1 of 1, from 254 to 287: score 4.8, E = 2.6
*->kspvPpaleeyvtaistsp.wlklgvtpvtpqkssn<-*
ks++P++ + +++sts +++ + t v +q +sn
F18E9.5a 254 KSWSPKNESLDYQPASTSSeFTET--TSVANQTESN 287
DEAD: domain 1 of 1, from 333 to 378: score 2.6, E = 8.3
*->SATlpneverlaklflknpvevs..........vkse.ptplrikqk
SAT p +++r+++ + knp ++ +++ +++++++++++ +p+r ++
F18E9.5a 333 SATEP-PIPRTKRAYTKNPNTIRkrrmkknqsdDEEDdGPPKRRTIN 378
<-*
F18E9.5a - -
jmjC: domain 1 of 1, from 757 to 865: score 159.6, E = 3.1e-45
*->wlylGmpfsttpwHiedqglySinylhfgapkvWyiiPpeyaekfek
++y+++ +s+tp+H+e+ ++Sin++ +++++vW+++P+ey++++e
F18E9.5a 757 QMYAKPIGSRTPAHMENSLMASINWNRGPGTCVWFAVPYEYWGQLE- 802
lhkflskhgpapdleggeqpdldlrhlltlisPkvlpLlenGipvyrfvQ
++ +hg + +++ +++P++++Lle G+pv +f Q
F18E9.5a 803 --FMIGEHG--------------HKYQDQDYWPSEKELLELGVPVIKFEQ 836
kpGEfVftfPGayHqVfNlGfniaeavNF<-*
k++E+V++++G++H+V+++ f+i++++N+
F18E9.5a 837 KADEMVYVNTGCFHWVQSNSFCINVSWNV 865
DiHfolate_red: domain 1 of 1, from 873 to 893: score 8.3, E = 0.24
*->kislIvAvdkpnlgIGkdgdLP<-*
+ IvA+d+ n++IG++ + P
F18E9.5a 873 LATSIVAHDH-NMLIGNQAHVP 893