Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F19B10.9
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Query: F19B10.9 CE09476 status:Partially_confirmed TR:O02073 protein_id:AAB52929.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
T-box T-box 276.8 2.9e-79 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
T-box 1/1 168 365 .. 1 212 [] 276.8 2.9e-79
Alignments of top-scoring domains:
T-box: domain 1 of 1, from 168 to 365: score 276.8, E = 2.9e-79
*->kvsLedreLWkkFhelgtEMIVTKsGRRMFPtlkykVsGLdPnalYs
k+sL ++e+W+kFhe+gtEM+V++sGRR+FP l ykVsGLdP++lY+
F19B10.9 168 KISLANQEQWAKFHEIGTEMMVFNSGRRLFPLLAYKVSGLDPHKLYC 214
vlldfvpvDdkRYKYnfnng..kWvvaGKaEphppdsrvyvHPDSdl.dv
++++p d+ YK++++++ ++Wv++ ++ ++++++P S++ ++
F19B10.9 215 AGVHMIP--DSAYKQEYDHDlqQWVNC-----LNQ-KKTIFKPTSEIlGR 256
palsimidetGahWMkqpVSFdklKLTNiqy.K.........snesledk
++ +G+++M+ +++++++K++Ni+++K+++ + ++++++ +
F19B10.9 257 IE-------NGFKLMSLGIDMSDVKIFNIAIrKktplqieksRKP---NL 296
nghmIiviLnSMHKYqPrlhiVevddssslspqplsertvatfsFpeTqF
+ I ++ ++KY P+++i+e+++s+++ ++++a+++FpeT+F
F19B10.9 297 DKT-I--EVLIQYKYLPVIKIYELSNSGME------KKEIAQATFPETSF 337
IAVTAYQNqeiTkLKIdnNPFAKGFRda<-*
++V+ Y+Nq+i+++K++ N +++++R++
F19B10.9 338 VTVSIYRNQKIKEMKTLGNKYCRTDRKQ 365