Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F19B6.4
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: F19B6.4 CE05669 white protein like status:Partially_confirmed TR:Q19585 protein_id:CAA93461.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
ABC_tran ABC transporter 139.2 3.9e-39 1
DUF258 Protein of unknown function, DUF258 5.5 1.5 1
DbpA DbpA RNA binding domain 5.3 4 1
UPF0042 Uncharacterised P-loop ATPase protein family 2.6 7.9 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
UPF0042 1/1 130 144 .. 1 16 [. 2.6 7.9
DUF258 1/1 129 151 .. 28 50 .. 5.5 1.5
DbpA 1/1 278 296 .. 65 83 .. 5.3 4
ABC_tran 1/1 129 320 .. 1 199 [] 139.2 3.9e-39
Alignments of top-scoring domains:
UPF0042: domain 1 of 1, from 130 to 144: score 2.6, E = 7.9
*->ielvivtGrSGAGKsV<-*
el + G SGAGK++
F19B6.4 130 -ELTFIMGSSGAGKTT 144
DUF258: domain 1 of 1, from 129 to 151: score 5.5, E = 1.5
*->gkisvfaGqSGVGKSSLiNaLlp<-*
g ++ ++G SG+GK +L+N+L++
F19B6.4 129 GELTFIMGSSGAGKTTLLNILTG 151
DbpA: domain 1 of 1, from 278 to 296: score 5.3, E = 4
*->madavLkklkgtrikGkql<-*
m+++v+k+l++++i Gk++
F19B6.4 278 MSHQVIKALRQLTIEGKTV 296
ABC_tran: domain 1 of 1, from 129 to 320: score 139.2, E = 3.9e-39
*->GevlalvGpNGaGKSTLLklisGllp...pteGtilldGardlsdls
Ge++ ++G++GaGK+TLL++++G ++ t G+i ++G r + +
F19B6.4 129 GELTFIMGSSGAGKTTLLNILTGRNLkniETDGDIMING-RNMISNE 174
klkerlerlrknigvvfQdptlfpnpeltvreniafglrls..lglskde
+l + +v Qd++++ +ltvre+++f++ l +++ l e
F19B6.4 175 -----MKKLSA---YVQQDDVFIG--TLTVRETLRFAAKLRspSALGATE 214
qrdrlkkagaeelLerlglgy...dhlldrrpgtLSGGqkQRvaiARaLl
+++ ++elL ++ l++ +++++ ++LS G+++R+a A+ +l
F19B6.4 215 LDSI-----VDELLVMMSLKKcenTKVGTMTEKSLSRGERKRLAFACEIL 259
tkpklLlLDEPTagLDpasraqllellrelrqqggTvllitHdld.lldr
t+p++L+ DEPT+gLD q++++lr+l+ +g+Tv+ + H++ + + +
F19B6.4 260 TDPPILFCDEPTSGLDSFMSHQVIKALRQLTIEGKTVICTIHQPStSVYH 309
laDrilvledG<-*
aD ++ l++G
F19B6.4 310 MADQLILLSQG 320