Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm2/seq/F19B6.4
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Query:  F19B6.4  CE05669   white protein like status:Partially_confirmed TR:Q19585 protein_id:CAA93461.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
ABC_tran ABC transporter                                139.2    3.9e-39   1
DUF258   Protein of unknown function, DUF258              5.5        1.5   1
DbpA     DbpA RNA binding domain                          5.3          4   1
UPF0042  Uncharacterised P-loop ATPase protein family     2.6        7.9   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
UPF0042    1/1     130   144 ..     1    16 [.     2.6      7.9
DUF258     1/1     129   151 ..    28    50 ..     5.5      1.5
DbpA       1/1     278   296 ..    65    83 ..     5.3        4
ABC_tran   1/1     129   320 ..     1   199 []   139.2  3.9e-39

Alignments of top-scoring domains:
UPF0042: domain 1 of 1, from 130 to 144: score 2.6, E = 7.9
                   *->ielvivtGrSGAGKsV<-*
                       el  + G SGAGK++
     F19B6.4   130    -ELTFIMGSSGAGKTT    144

DUF258: domain 1 of 1, from 129 to 151: score 5.5, E = 1.5
                   *->gkisvfaGqSGVGKSSLiNaLlp<-*
                      g ++ ++G SG+GK +L+N+L++
     F19B6.4   129    GELTFIMGSSGAGKTTLLNILTG    151

DbpA: domain 1 of 1, from 278 to 296: score 5.3, E = 4
                   *->madavLkklkgtrikGkql<-*
                      m+++v+k+l++++i Gk++
     F19B6.4   278    MSHQVIKALRQLTIEGKTV    296

ABC_tran: domain 1 of 1, from 129 to 320: score 139.2, E = 3.9e-39
                   *->GevlalvGpNGaGKSTLLklisGllp...pteGtilldGardlsdls
                      Ge++ ++G++GaGK+TLL++++G   ++  t G+i ++G r +   +
     F19B6.4   129    GELTFIMGSSGAGKTTLLNILTGRNLkniETDGDIMING-RNMISNE 174

                   klkerlerlrknigvvfQdptlfpnpeltvreniafglrls..lglskde
                          +l +   +v Qd++++   +ltvre+++f++ l +++ l   e
     F19B6.4   175 -----MKKLSA---YVQQDDVFIG--TLTVRETLRFAAKLRspSALGATE 214

                   qrdrlkkagaeelLerlglgy...dhlldrrpgtLSGGqkQRvaiARaLl
                   +++      ++elL ++ l++ +++++     ++LS G+++R+a A+ +l
     F19B6.4   215 LDSI-----VDELLVMMSLKKcenTKVGTMTEKSLSRGERKRLAFACEIL 259

                   tkpklLlLDEPTagLDpasraqllellrelrqqggTvllitHdld.lldr
                   t+p++L+ DEPT+gLD     q++++lr+l+ +g+Tv+ + H++ + + +
     F19B6.4   260 TDPPILFCDEPTSGLDSFMSHQVIKALRQLTIEGKTVICTIHQPStSVYH 309

                   laDrilvledG<-*
                    aD ++ l++G
     F19B6.4   310 MADQLILLSQG    320



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