Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F19H8.3
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Query: F19H8.3 CE15872 locus:arl-3 ADP-ribosylation factors (Arf family) (contains ATP\/GTP binding P-loop) status:Predicted TR:O45379 protei
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
arf ADP-ribosylation factor family 309.7 3.5e-89 1
G-alpha G-protein alpha subunit 5.7 1.4 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
G-alpha 1/1 16 36 .. 27 47 .. 5.7 1.4
arf 1/1 1 181 [. 1 191 [] 309.7 3.5e-89
Alignments of top-scoring domains:
G-alpha: domain 1 of 1, from 16 to 36: score 5.7, E = 1.4
*->revKLLLLGAGESGKSTIlKQ<-*
re+++LLLG GK TIlKQ
F19H8.3 16 REIRILLLGLDNAGKTTILKQ 36
arf: domain 1 of 1, from 1 to 181: score 309.7, E = 3.5e-89
*->GlgflkiflkllglwnKEmRILiLGLDnAGKTTILykLklgeivtti
+g+ ++++++++ +E+RIL+LGLDnAGKTTIL++L +++ + +
F19H8.3 1 -MGLIDVLKSFKSPSGREIRILLLGLDNAGKTTILKQLSSEDVQHVT 46
PTiGFNvEtveykN.ikFtvWDvGGQeslRPlWrnYfpnTdavIfVVDSa
PT GFNv+tv+ ++i+++vWD+GGQ+s+RP+W nY++n+d +IfV+DS+
F19H8.3 47 PTKGFNVKTVAAMGdIRLNVWDIGGQRSIRPYWSNYYENIDTLIFVIDSN 96
DreRieeakeELhaLLneeeLadAplLifANKQDlpgAmseaEireaLgL
D++R++e+ EL +LL ee+L+++p+LifANKQDl +A+s++Ei+ +L+L
F19H8.3 97 DKKRFDEMNIELGELLDEEKLRKVPVLIFANKQDLVTAASSEEITRKLNL 146
helkgskgkVtlegdRpWeiqgcsAvkGeGLyEGldWLsnnikkr<-*
l+ + R+W+iq+csA+k eG+ +G+ W++ n+k +
F19H8.3 147 DLLR-D---------RTWHIQACSALKNEGINDGITWVASNLKPA 181