Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F20B10.1
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Query: F20B10.1 CE17688 neurexin III like status:Partially_confirmed TR:Q19617 protein_id:CAA93465.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
EGF EGF-like domain 48.7 4.8e-12 2
laminin_G Laminin G domain 30.2 2.6e-07 3
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
laminin_G 1/3 167 292 .. 1 155 [] 28.8 6.1e-07
laminin_G 2/3 382 405 .. 65 88 .. 0.3 82
EGF 1/2 461 493 .. 1 45 [] 35.1 3.3e-08
laminin_G 3/3 837 855 .. 137 155 .] 1.9 28
EGF 2/2 876 908 .. 1 45 [] 21.6 0.00022
Alignments of top-scoring domains:
laminin_G: domain 1 of 3, from 167 to 292: score 28.8, E = 6.1e-07
*->FRTtepsGlLllgYnGtntdrrgkkeigdDFlaleLvdGrlevsydl
FRT+ + + +++++ d l+ ++++G ++v +d+
F20B10.1 167 FRTYRSGVFFF--SMADQGDV----------LIAQIIHGTVHVIFDF 201
GsghrlrpavvrsgdrvlnDGkWHrvelerngrkgtLsVdgeepsvvdge
Gs +p + +g+ l+DG+WH ++++Ls+dg ++ +
F20B10.1 202 GSL---TPSRISAGKA-LDDGRWHEMRWLHQFDSVQLSIDGVL---LNQT 244
spsgpditsenLdldtppiLyvGGlPelqksvkrrlaaistsFkGCirdv
+p g + Ldl + +GG P + i t F GCi ++
F20B10.1 245 APTGLYR---KLDLHSV--VHIGGRP-----NDDFSQGIETTFTGCIARL 284
singkpld<-*
+n+ l+
F20B10.1 285 QLNNADLL 292
laminin_G: domain 2 of 3, from 382 to 405: score 0.3, E = 82
*->lnDGkWHrvelerngrkgtLsVdg<-*
++DG WH+++l+ g ++ + +dg
F20B10.1 382 VADGAWHSFSLRIRGVRMEIDIDG 405
EGF: domain 1 of 2, from 461 to 493: score 35.1, E = 3.3e-08
*->CapnnpCsngGtCvntpggssdnfggytCeCppGdyylsytGkrC<-
C pn pC ngG Cv + ++y C C++G y Gk+C
F20B10.1 461 CLPN-PCENGGGCVQSAL------DDYVCNCKEG-----YKGKNC 493
*
F20B10.1 - -
laminin_G: domain 3 of 3, from 837 to 855: score 1.9, E = 28
*->stsFkGCirdvsingkpld<-*
st+F G ir+v++ g+ l
F20B10.1 837 STGFAGVIRNVHLCGVELA 855
EGF: domain 2 of 2, from 876 to 908: score 21.6, E = 0.00022
*->CapnnpCsngGtCvntpggssdnfggytCeCppGdyylsytGkrC<-
C p+ C+ngG+Cv+ + gy C+C + + G +C
F20B10.1 876 CRPD-LCQNGGQCVDKYD-------GYVCDCSMT----PFGGSDC 908
*
F20B10.1 - -