Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F20B6.8a
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Query: F20B6.8a CE04430 locus:hpk-1 serine\/threonine protein kinase status:Partially_confirmed TR:Q19632 protein_id:AAA82316.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
pkinase Protein kinase domain 182.0 9.6e-51 2
efhand EF hand 6.4 7.1 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
pkinase 1/2 122 343 .. 1 227 [. 169.2 6.9e-47
efhand 1/1 425 438 .. 16 29 .] 6.4 7.1
pkinase 2/2 430 458 .. 263 294 .] 12.8 0.018
Alignments of top-scoring domains:
pkinase: domain 1 of 2, from 122 to 343: score 169.2, E = 6.9e-47
*->yelleklGeGsfGkVykakhkdktgkiVAvKilkkekesikekrflr
ye+le lG+G+fG+V ka+ k +t +iVA+Kilk k++ +++ +
F20B6.8a 122 YEVLEFLGKGTFGQVVKAWKK-GTSEIVAIKILK--KHPSYARQGQI 165
EiqilkrLsHp.....NIvrligvfedtddhlylvmEymegGdLfdylrr
E++il rLs +++++ N vr ++ f +++h +lv+E++e L+d+l++
F20B6.8a 166 EVSILSRLSNEnseefNFVRAFECFN-HKSHTCLVFEMLEQ-NLYDFLKQ 213
ng.gplsekeakkialQilrGleYLHsngivHRDLKpeNILlden...dg
n+ pl+ + ++ i Q+l +l L s g +H DLKpeNI+l+++++++
F20B6.8a 214 NKfMPLPLNAIRPILFQVLTALLKLKSLGLIHADLKPENIMLVDPqqqPY 263
tvKiaDFGLArllesssklttfvGTpwYmmAPEvilegrgysskvDvWSl
vK++DFG A + ++t+ +++Y+ APE+ ++g ++ +D+WSl
F20B6.8a 264 RVKVIDFGSASHRS-KAVTNTYLQSRYYR-APEI-ILGLPFNESIDMWSL 310
GviLyElltggplfpgadlpaftggd.evdqli.if.vlklP<-*
G++++El+ g pl p g +e dq++ i++ +lP
F20B6.8a 311 GCVIAELFLGWPLYP---------GSsEYDQIRfIIqTQGLP 343
efhand: domain 1 of 1, from 425 to 438: score 6.4, E = 7.1
*->kIsfeEfkaalkkl<-*
+I+++Ef+++lkk+
F20B6.8a 425 RIDRQEFVDVLKKM 438
pkinase: domain 2 of 2, from 430 to 458: score 12.8, E = 0.018
*->elkdLlkkcLnkDPskRpGsatakeilnhpwf<-*
e+ d+lkk+L ++P R+ t e l+++++
F20B6.8a 430 EFVDVLKKMLVLNPDFRI---TPAEGLESKFV 458