Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F20B6.3
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Query: F20B6.3 CE04425 locus:mrp-6 ABC transporter status:Partially_confirmed TR:Q19625 protein_id:AAA82317.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
ABC_tran ABC transporter 272.5 5.6e-78 2
ABC_membrane ABC transporter transmembrane region 124.0 2.8e-33 2
Cloacin_immun Cloacin immunity protein 3.4 8.9 1
AIG1 AIG1 family 3.4 8.8 1
Glyco_hydro_2_C Glycosyl hydrolases family 2, TIM bar 3.2 5.8 1
UPF0149 Uncharacterised protein family (UPF01 3.1 9.9 1
GatB_N PET112 family, N terminal region 2.7 5.4 1
NB-ARC NB-ARC domain 2.2 9.5 1
Baculo_gp41 Structural glycoprotein p40/gp41 cons 2.2 9 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
UPF0149 1/1 4 17 .. 177 191 .] 3.1 9.9
ABC_membrane 1/2 102 374 .. 1 285 [] 44.0 2.7e-10
ABC_tran 1/2 510 681 .. 1 199 [] 125.3 3.9e-35
Glyco_hydro_2_C 1/1 665 698 .. 259 292 .. 3.2 5.8
Cloacin_immun 1/1 895 919 .. 1 26 [. 3.4 8.9
ABC_membrane 2/2 794 1082 .. 1 285 [] 88.1 1.7e-22
GatB_N 1/1 1085 1095 .. 279 289 .] 2.7 5.4
AIG1 1/1 1162 1176 .. 1 15 [. 3.4 8.8
NB-ARC 1/1 1164 1182 .. 44 62 .. 2.2 9.5
Baculo_gp41 1/1 1313 1323 .. 252 262 .] 2.2 9
ABC_tran 2/2 1161 1343 .. 1 199 [] 147.4 1.6e-41
Alignments of top-scoring domains:
UPF0149: domain 1 of 1, from 4 to 17: score 3.1, E = 9.9
*->hfgkkleeaqKPtLH<-*
hf+k++ e +KP ++
F20B6.3 4 HFQKTPDE-TKPDVN 17
ABC_membrane: domain 1 of 2, from 102 to 374: score 44.0, E = 2.7e-10
*->lliailllilagatalvtfplllgrlldsgfplsdgnddh.....ar
+ + ++l l ++t ++ +plll l+++ ++ + + + +a+
F20B6.3 102 VMAHAISLCLEELTRVA-QPLLLRELMSY---YDIEEGQEfpywpAM 144
sslislailslfavfvliglllqgsfyllagerlgqrlrkrlfrallrqi
++++++l f++ ++ + +f++ + ++g ++r+++ l+r+
F20B6.3 145 QVALIISLL-SFVT----VCIHHPYFHG--LLKVGNHARVATGVLLYRKS 187
lglfdsffdtnsvGeltsRltnDvekirdglgeklgllfqslatvvggli
l+ + + ++++G+++++l +D++k+++++ ++ +++ +l++++ ++i
F20B6.3 188 LRISLTSLFETNSGQIIQLLNTDAAKLEQAFLFAHYVWLCPLLMFFYAYI 237
vmfyyswkLtLillailpllillsavlakklrklsrkeqkayakagsvae
+++ ++ +L+ l ++ ++ +++ ++ l +r ++++ + +v+
F20B6.3 238 LWSMFGFCCLLGFL-VMMAIVSFQVHYSYQLGVNRRNIGDKMDSRLKVMS 286
EslsgirTVkafgrEeyelerfdkaledaekagikkaiiagllfgitqli
E+++gi+++k g+E ++ e++ +ed +ka a++++ + gi ++
F20B6.3 287 EIINGIKVIKMHGWENAFAEKIRILREDEIKAVGTSAFYSSMVMGIYFIS 336
sylsyalalwfGgylvasvisgglsvgtlfaflslgnqligpl<-*
+ + ++++ f++ +++l+ +fa+ l+n+ + p+
F20B6.3 337 AKI-GLFVYIFACDY----FDEILTTRGVFASSALFNSVRLPF 374
ABC_tran: domain 1 of 2, from 510 to 681: score 125.3, E = 3.9e-35
*->GevlalvGpNGaGKSTLLklisGllppteGtilldGardlsdlsklk
G ++++G+ G+GKS+LL +i+ + + t G ++++G
F20B6.3 510 GTCYGIIGSVGSGKSSLLLTILSESRMTRGNLSVNG-S--------- 546
erlerlrknigvvfQdptlfpnpeltvreniafglrlslglskdeqrdrl
+++ Q+p +f ++++++ni+fg + +k++++++l
F20B6.3 547 ---------FAYCAQEPWIF---TGSIQDNIVFGSEF----NKERYENAL 580
kkagaeelLerlglgydhlldrrpgtLSGGqkQRvaiARaLltkpklLlL
+++ + L+++ g+ + ++++++tLSGGq+ Rva+ARa++ +++++lL
F20B6.3 581 ELCLLTPDLRQFANGDMTIVGDNGSTLSGGQRARVALARAVYADADIYLL 630
DEPTagLDpasraqllellrelrqqggTvllitHdldlldrlaDrilvle
D P ++ D++ ++l+e l + + v+l+tH++ + + D ++ ++
F20B6.3 631 DDPLSAVDAHVGKKLYENLIRGFLSDKLVILVTHQIHF-LSELDSVILMK 679
dG<-*
+
F20B6.3 680 NN 681
Glyco_hydro_2_C: domain 1 of 1, from 665 to 698: score 3.2, E = 5.8
*->QggfiwdwidqaiqkrdpnvgdGkLhevlayGGD<-*
Q++f+++++++++ k + vg+G L e+ +++ D
F20B6.3 665 QIHFLSELDSVILMKNNKMVGNGSLDELKSTFTD 698
Cloacin_immun: domain 1 of 1, from 895 to 919: score 3.4, E = 8.9
*->GLKLdltWFDKktEdFKGeEYsKDFG<-*
LK + +FDK E + +sKD G
F20B6.3 895 -LKTESEFFDKNSEGMILNRFSKDIG 919
ABC_membrane: domain 2 of 2, from 794 to 1082: score 88.1, E = 1.7e-22
*->lliailllilagatalvtfplllgrlldsgfplsdgnddh......a
++++ ++li + +++v ++l+++l l++ n d++++++++
F20B6.3 794 IWLVVCVLITQLMNNFV--DWWLNKWLVD---LDMNNADNstskeeF 835
rsslislails..........lfavfvliglllqgsfyllagerlgqrlr
+ + l+++++ + ++ + +++++ v+ ++l +++ + + + ++
F20B6.3 836 NRNVDVLGYTFnvtfqtyeltFIISTVIMSILGVVRSVW--FRNAQLMAS 883
krlfrallrqilglfdsffdtnsvGeltsRltnDvekirdglgeklgllf
+ l+ ++++ +l+ +ffd+ns G +++R+++D+ +d+l+++ + ++
F20B6.3 884 RILHNSMFDCVLKTESEFFDKNSEGMILNRFSKDIGLTDDLLAFTYFEFV 933
qslatvvgglivmfyyswkLtLillailpllillsavlakklrklsrkeq
+t+vg++++ + + + L++ +i+ ++++ + + ++r+l+r e+
F20B6.3 934 FGTLTFVGIVGLVSMVRPIVILACAFITAGFYFCRKMYVHRSRELKRIEA 983
kayakagsvaeEslsgirTVkafgrEeyelerfdkaledaekagikkaii
a++++++ ++ ++ g+ T++a++ E ++e+f+ + + a+ + +++
F20B6.3 984 AARSPLNTTITSTVHGLSTIRAYRKENEMIEKFCALHDVYMAAYNMGLLS 1033
agllfgitqlisylsyalalwfGgylvasvisgglsvgtlfaflslgnql
a+++++++++++++ ++ ++ + ++l +++ l+vg++ ++l+ ql
F20B6.3 1034 ARWFGICIDFLVSV-FVSIVAIVVVL----QYETLTVGEVGLCLVCAVQL 1078
igpl<-*
+g +
F20B6.3 1079 SGFF 1082
GatB_N: domain 1 of 1, from 1085 to 1095: score 2.7, E = 5.4
*->iqRQvnllerG<-*
i+RQ ++le+G
F20B6.3 1085 IMRQSAELENG 1095
AIG1: domain 1 of 1, from 1162 to 1176: score 3.4, E = 8.8
*->rnIVLVGRTGNGKSA<-*
I VGRTG+GKS+
F20B6.3 1162 QKIGVVGRTGAGKST 1176
NB-ARC: domain 1 of 1, from 1164 to 1182: score 2.2, E = 9.5
*->vgivGMGGvGKTTLAkqiy<-*
+g+vG+ G GK+TL k i+
F20B6.3 1164 IGVVGRTGAGKSTLIKIIF 1182
Baculo_gp41: domain 1 of 1, from 1313 to 1323: score 2.2, E = 9
*->PdlFqgAtflT<-*
+d F +At +T
F20B6.3 1313 RDFFKNATIIT 1323
[output cut off at A = 10 top alignments]