Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F20C5.2a
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Query: F20C5.2a CE27986 locus:klp-11 kinesin status:Confirmed TR:Q19633 protein_id:CAA92295.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
kinesin Kinesin motor domain 574.3 7.9e-169 1
Thymosin Thymosin beta-4 family 8.7 0.59 1
GED Dynamin GTPase effector domain 8.2 0.42 1
ELK ELK domain 6.2 3.1 1
Troponin Troponin 3.9 7.1 1
AFOR_N Aldehyde ferredoxin oxidoreductase, N-termin 3.0 4.6 1
DUF260 Protein of unknown function DUF260 2.8 1.4 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AFOR_N 1/1 298 326 .. 159 189 .. 3.0 4.6
kinesin 1/1 58 344 .. 1 373 [] 574.3 7.9e-169
ELK 1/1 352 373 .. 1 22 [] 6.2 3.1
Troponin 1/1 358 376 .. 168 186 .] 3.9 7.1
DUF260 1/1 358 389 .. 89 119 .] 2.8 1.4
Thymosin 1/1 419 439 .. 21 41 .] 8.7 0.59
GED 1/1 516 535 .. 78 97 .] 8.2 0.42
Alignments of top-scoring domains:
AFOR_N: domain 1 of 1, from 298 to 326: score 3.0, E = 4.6
*->yeTtriLkknlgkefEGMevriAcIGPAGEN<-*
+++tr L++ lg+ +v +AcIGPA+ N
F20C5.2a 298 SKLTRLLQDSLGGN--SKTVMVACIGPASYN 326
kinesin: domain 1 of 1, from 58 to 344: score 574.3, E = 7.9e-169
*->ktFtFDkVFdpestqefvyeetakPlvesvleGyNgtiFAYGQTGSG
k FtFD+++d++stq + yeet ++lv+svl+GyN+tiFAYGQTG+G
F20C5.2a 58 KDFTFDAIYDENSTQSDLYEETFRDLVDSVLNGYNATIFAYGQTGTG 104
KTYTMeGppdsdkegsgnptdsyttpeeepGiiPRaledlFerieerker
KT+TMeG+++ ++e++G+i+ +++++Fe++ +++
F20C5.2a 105 KTHTMEGKSS---------------DPEQRGVIYKCIDHIFEHM-AASHN 138
kgvfPklnwellnsqetligvsfdrglssdlyvndlefsvrvSylEIYNE
e++vr+SylEIY+E
F20C5.2a 139 -----------------------------------QEYLVRASYLEIYQE 153
kirDLLspsppqagspsksnekkkkpgvpLrireDpkrGgkmdgvyVeGL
++rDLL+ + ++k+ L+i+e p++G vyV++L
F20C5.2a 154 ELRDLLEAE-------------SNKK---LEIKERPDGG-----VYVKDL 182
tevpVssaeevlelLelGnknRtvasTamNerSSRSHaiFtitveqrnrd
t+ +++ e++e++ +Gn +R+v+ T+mNe+SSRSHaiF+itve +++
F20C5.2a 183 TSKLTRTVGEIHEVMIRGNGHRSVGRTNMNEHSSRSHAIFIITVECSRIG 232
segskvtgkdnsgeesvrvskLnLVDLAGSERaskTgatGAggrRLkEga
++ge++++v++LnLVDLAGSER+skTg A+g+R+kE++
F20C5.2a 233 ----------EDGESHITVGRLNLVDLAGSERQSKTG---ATGERFKEAT 269
nINkSLsaLGnVInALa.....HiPYRDSKLTrLLqDSLGGGaNsKTlMI
+IN+SLsaLGnVI+AL++ ++ HiPYRDSKLTrLLqDSLGG NsKT+M+
F20C5.2a 270 KINLSLSALGNVISALVdaksaHIPYRDSKLTRLLQDSLGG--NSKTVMV 317
aniSPsssrNntnyeETlsTLrFAsRAknIk<-*
a+i P+s+ n+eETl TLr+A+RAknIk
F20C5.2a 318 ACIGPASY----NFEETLGTLRYANRAKNIK 344
ELK: domain 1 of 1, from 352 to 373: score 6.2, E = 3.1
*->eLKeeLlrKYsgylssLkeEfl<-*
+ K+ Llr +++++ L+e +
F20C5.2a 352 DPKDALLREFQEEIEMLREQLK 373
Troponin: domain 1 of 1, from 358 to 376: score 3.9, E = 7.1
*->lraekkeaesLRanlKeVk<-*
lr + e e LR++lK++k
F20C5.2a 358 LREFQEEIEMLREQLKQRK 376
DUF260: domain 1 of 1, from 358 to 389: score 2.8, E = 1.4
*->ieslqaeLalvkselstyrgdpqd.qvpqesp<-*
+++ q+e+++++++l++ ++ d+ + +++
F20C5.2a 358 LREFQEEIEMLREQLKQRKTRSRDgATQSFYD 389
Thymosin: domain 1 of 1, from 419 to 439: score 8.7, E = 0.59
*->EtqEKnpLPtKEtiEqEKqae<-*
E qEK L KE iEq + ae
F20C5.2a 419 EIQEKHDLLEKERIEQARVAE 439
GED: domain 1 of 1, from 516 to 535: score 8.2, E = 0.42
*->kelkkrLelLkkArqiisev<-*
k+lkk+L L++Ar +i +v
F20C5.2a 516 KKLKKMLIKLRQARNEIRDV 535