Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F20H11.4
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Query: F20H11.4 CE20702 protein-tyrosine phosphatase status:Partially_confirmed TR:O01736 protein_id:AAD34661.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Y_phosphatase Protein-tyrosine phosphatase 315.1 8.1e-91 1
DSPc Dual specificity phosphatase, catalytic 7.4 0.83 1
UPF0081 Uncharacterised protein family (UPF0081 5.3 3.7 1
PAAD_DAPIN PAAD/DAPIN/Pyrin domain 4.4 7.6 1
6PGD 6-phosphogluconate dehydrogenase, C-ter 2.5 3.8 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
6PGD 1/1 166 176 .. 294 304 .] 2.5 3.8
DSPc 1/1 315 328 .. 111 124 .. 7.4 0.83
UPF0081 1/1 325 338 .. 1 14 [. 5.3 3.7
Y_phosphatase 1/1 142 375 .. 1 274 [] 315.1 8.1e-91
PAAD_DAPIN 1/1 391 421 .. 61 92 .] 4.4 7.6
Alignments of top-scoring domains:
6PGD: domain 1 of 1, from 166 to 176: score 2.5, E = 3.8
*->PvdkffHTnWt<-*
P + f+H+nW
F20H11.4 166 PDNDFIHANWM 176
DSPc: domain 1 of 1, from 315 to 328: score 7.4, E = 0.83
*->VHCqAGiSRSAtli<-*
+HC AGi R+Atli
F20H11.4 315 IHCSAGIGRTATLI 328
UPF0081: domain 1 of 1, from 325 to 338: score 5.3, E = 3.7
*->mavLalDvGtKRIG<-*
+++++D+G RIG
F20H11.4 325 ATLIGVDYGNQRIG 338
Y_phosphatase: domain 1 of 1, from 142 to 375: score 315.1, E = 8.1e-91
*->NkeKNRykdilpyDhtRVkLk...egsDYINAnyidgpqsrtlvvyk
+ eK+Ry dil+ D tRV+L+++++++D+I+An++++p
F20H11.4 142 HSEKCRYYDILCPDATRVVLQnrpPDNDFIHANWMTMP--------- 179
kpkayIaTQgPlpnTieDFWrMvweqkvtvIVMLtklvEkgreeeKtCaq
+++yI +QgP++ T+eDFW+Mv+ +k++++VM+++ +E+g +K C++
F20H11.4 180 DKFRYISAQGPMDQTVEDFWHMVYTEKAPAVVMICDWEEDGI--QK-CSR 226
YWPeeggeeggsltyGditVtlvseekkddddytvRtleltn.gdeskne
Y P+ e++ s ++G +++t ++ ++ ++d+ + +e++ ++
F20H11.4 227 YIPS---EDNISHVCGIYRITKIDQMTMVYADVALQSFEISVtDK----- 268
akqeklkgetrtVthyhytgWPDhgvPesgpkslldflrkvrksqsqene
+l ++++ V+hyh++ W Dh +P + + s+l++l+ +r ++
F20H11.4 269 ----SLECPSLVVKHYHFLKWRDHTAPMT-SISVLKLLKALRDPKR---- 309
sgeaspdsgprSsctgPivVHCSAGiGRTGtfiaidillqqleaegvvid
+g P+v+HCSAGiGRT+t+i++d++ q++ + g++ +
F20H11.4 310 -------PG-------PPVIHCSAGIGRTATLIGVDYGNQRIGEVGEM-N 344
ifdivkelRsqRpgmVQteeQYiFiydaile<-*
++div+e+R++R +VQ+ Q+iF+ ++i++
F20H11.4 345 VLDIVREMRQMRDKAVQSHHQFIFMLMCIAD 375
PAAD_DAPIN: domain 1 of 1, from 391 to 421: score 4.4, E = 7.6
*->gedsaleklirvledipnlrlLAeqLkkekek<-*
++d + e++++vl + + +++ Ae++kkeke+
F20H11.4 391 LADFYTEFMKKVLMERK-KKDEAEKAKKEKEE 421