Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F21D5.3
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Query: F21D5.3 CE03246 laccase like copper oxidase status:Partially_confirmed TR:Q19687 protein_id:CAA91039.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Cu-oxidase Multicopper oxidase 95.9 2.4e-26 3
Tuberin Tuberin -0.1 8.8 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Cu-oxidase 1/3 124 187 .. 103 180 .] 29.8 2.3e-07
Cu-oxidase 2/3 255 349 .. 34 139 .. 43.3 3.1e-11
Tuberin 1/1 637 645 .. 773 781 .] -0.1 8.8
Cu-oxidase 3/3 607 661 .. 116 180 .] 23.5 1.5e-05
Alignments of top-scoring domains:
Cu-oxidase: domain 1 of 3, from 124 to 187: score 29.8, E = 2.3e-07
*->h.igfhaatgadggnyvnPfrvDsldIfpGqrysvlvtanqdvnpgn
h+i++h+ + +dg ++v+ +++I + + + + a+ n+g+
F21D5.3 124 HgIDKHGMWYMDGVAFVQ-----QCPIQSTNKFEYRFIAD---NKGT 162
ywihahisghysadtagfdnGlatailrYdga<-*
w+h h+ + + + G+a+++++ d +
F21D5.3 163 HWYHGHMQTDRGD-------GIAGGFIVVDQN 187
Cu-oxidase: domain 2 of 3, from 255 to 349: score 43.3, E = 3.1e-11
*->garpp.ppevdstliNGkg.................vltvepGktyr
g++ p + ++l N kg +++ ++++ + + + + +p++ ++
F21D5.3 255 GGAVPiS----AILLNDKGwydhdiiksqpfnlpleRFQIKPNEDIL 297
lrliNnltvgadpsgnmilnfsihgHgltvveadprtrdphigfhaatga
+r++N g+ + l ++gH +tvv+ad
F21D5.3 298 FRIVN---GGVAQE----LMLYVEGHPMTVVAAD---------------- 324
dggnyvnPfrvDsldIfpGqrysvlvt<-*
g v P++vD l +fpG+ry+ l++
F21D5.3 325 --GDEVVPMKVDRLIVFPGERYDILIK 349
Tuberin: domain 1 of 1, from 637 to 645: score -0.1, E = 8.8
*->WFirCrLpf<-*
WF C L++
F21D5.3 637 WFAHCHLEL 645
Cu-oxidase: domain 3 of 3, from 607 to 661: score 23.5, E = 1.5e-05
*->nyvnPfrvDsldIfpGqrysvlvtanqdvnpgnywihahisghysad
n +nP+++D++++++ ++y ++++ + vnpg ++ h+h + h+++
F21D5.3 607 NTKNPTKRDTITLPV-GGYITIRFRA--VNPGWWFAHCHLELHLMG- 649
tagfdnGlatailrYdga<-*
G++ a+ + d +
F21D5.3 650 ------GTGYAYKVGDQN 661