Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm2/seq/F21D5.3
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Query:  F21D5.3  CE03246   laccase like copper oxidase status:Partially_confirmed TR:Q19687 protein_id:CAA91039.1

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N
--------   -----------                                  -----    ------- ---
Cu-oxidase Multicopper oxidase                           95.9    2.4e-26   3
Tuberin    Tuberin                                       -0.1        8.8   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
Cu-oxidase   1/3     124   187 ..   103   180 .]    29.8  2.3e-07
Cu-oxidase   2/3     255   349 ..    34   139 ..    43.3  3.1e-11
Tuberin      1/1     637   645 ..   773   781 .]    -0.1      8.8
Cu-oxidase   3/3     607   661 ..   116   180 .]    23.5  1.5e-05

Alignments of top-scoring domains:
Cu-oxidase: domain 1 of 3, from 124 to 187: score 29.8, E = 2.3e-07
                   *->h.igfhaatgadggnyvnPfrvDsldIfpGqrysvlvtanqdvnpgn
                      h+i++h+ + +dg ++v+     +++I +   + + + a+   n+g+
     F21D5.3   124    HgIDKHGMWYMDGVAFVQ-----QCPIQSTNKFEYRFIAD---NKGT 162

                   ywihahisghysadtagfdnGlatailrYdga<-*
                    w+h h+ + + +       G+a+++++ d +
     F21D5.3   163 HWYHGHMQTDRGD-------GIAGGFIVVDQN    187

Cu-oxidase: domain 2 of 3, from 255 to 349: score 43.3, E = 3.1e-11
                   *->garpp.ppevdstliNGkg.................vltvepGktyr
                      g++ p +    ++l N kg  +++  ++++ + + + +  +p++ ++
     F21D5.3   255    GGAVPiS----AILLNDKGwydhdiiksqpfnlpleRFQIKPNEDIL 297

                   lrliNnltvgadpsgnmilnfsihgHgltvveadprtrdphigfhaatga
                   +r++N    g+  +    l   ++gH +tvv+ad
     F21D5.3   298 FRIVN---GGVAQE----LMLYVEGHPMTVVAAD---------------- 324

                   dggnyvnPfrvDsldIfpGqrysvlvt<-*
                     g  v P++vD l +fpG+ry+ l++
     F21D5.3   325 --GDEVVPMKVDRLIVFPGERYDILIK    349

Tuberin: domain 1 of 1, from 637 to 645: score -0.1, E = 8.8
                   *->WFirCrLpf<-*
                      WF  C L++
     F21D5.3   637    WFAHCHLEL    645

Cu-oxidase: domain 3 of 3, from 607 to 661: score 23.5, E = 1.5e-05
                   *->nyvnPfrvDsldIfpGqrysvlvtanqdvnpgnywihahisghysad
                      n +nP+++D++++++ ++y ++++ +  vnpg ++ h+h + h+++
     F21D5.3   607    NTKNPTKRDTITLPV-GGYITIRFRA--VNPGWWFAHCHLELHLMG- 649

                   tagfdnGlatailrYdga<-*
                         G++ a+ + d +
     F21D5.3   650 ------GTGYAYKVGDQN    661



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