Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F21F3.2
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: F21F3.2 CE09532 ser\/thr-protein kinase status:Partially_confirmed TR:P91267 protein_id:AAB42279.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
pkinase Protein kinase domain 162.8 5.6e-45 1
CheR CheR methyltransferase, SAM binding dom 5.9 1.1 1
Lipoprotein_3 Lipoprotein 4.8 5 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CheR 1/1 188 208 .. 21 43 .. 5.9 1.1
Lipoprotein_3 1/1 245 274 .. 74 105 .] 4.8 5
pkinase 1/1 100 303 .. 77 294 .] 162.8 5.6e-45
Alignments of top-scoring domains:
CheR: domain 1 of 1, from 188 to 208: score 5.9, E = 1.1
*->ppllakarnsk.arrivrIWSAGC<-*
p+ll+ka+ + ++ v +WSAGC
F21F3.2 188 PELLMKAM--EyNST-VDVWSAGC 208
Lipoprotein_3: domain 1 of 1, from 245 to 274: score 4.8, E = 5
*->SlldqkILekeldeSRFvKAFGsGkskedVeP<-*
S+++++ Leke +F+K FG + +d+ P
F21F3.2 245 SAMKGEKLEKEYW--KFTKGFGLQRLVNDISP 274
pkinase: domain 1 of 1, from 100 to 303: score 162.8, E = 5.6e-45
*->vmEymegGdLfdylrrnggplsekeakkialQilrGleYLHsngivH
v+++m++ L++++r++ ++ +++ +++Qi +Gl+YL+++++vH
F21F3.2 100 VFDFMPN-TLAEVIRQKL---TDLDIRLYTWQIFSGLKYLEEHKVVH 142
RDLKpeNILldendgtvKiaDFGLArllesssklttfvGTpwYmmAPEvi
RDLKp NIL+d+++ ++Ki+DFG A+ ++ + ++ + T++Y+ +PE+
F21F3.2 143 RDLKPVNILVDHDTAFLKISDFGSAKIIVKGKANNFYQVTRFYR-PPEL- 190
leg.rgysskvDvWSlGviLyElltggplfpgadl.p...aftggdevdq
l+ +y s vDvWS+G+i++E++ + +fpg+d + ++++ +
F21F3.2 191 LMKaMEYNSTVDVWSAGCIMAEMVKRHVVFPGRDSaHqlkLYCRCF---- 236
liifvlklPfsdelpktridpleelfriikrp.......glrlplpsncS
+ P ++ d+ ++ + +++ + ++++++ +l +S
F21F3.2 237 ------GAPNEQ-------DISAMKGEKLEKEywkftkgFGLQRLVNDIS 273
eelkdLlkkcLnkDPskRpGsatakeilnhpwf<-*
++ ++++k++L + P+kR+ k++l++ +f
F21F3.2 274 PDQLQFIKRILVYAPEKRL---RGKQLLQDDFF 303