Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F21F3.1
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Query: F21F3.1 CE09531 status:Partially_confirmed TR:P91268 protein_id:AAB42278.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
NHL NHL repeat 103.0 1.1e-27 4
eRF1_3 eRF1 domain 3 5.7 4.4 1
Pep_deformylase Polypeptide deformylase 2.8 8.6 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
NHL 1/4 113 128 .. 1 17 [. 0.4 2.8e+02
eRF1_3 1/1 163 173 .. 1 11 [. 5.7 4.4
NHL 2/4 178 205 .. 1 29 [] 39.4 1.9e-09
NHL 3/4 229 257 .. 1 29 [] 40.6 8.7e-10
NHL 4/4 279 307 .. 1 29 [] 27.7 4.5e-06
Pep_deformylase 1/1 385 403 .. 173 191 .] 2.8 8.6
Alignments of top-scoring domains:
NHL: domain 1 of 4, from 113 to 128: score 0.4, E = 2.8e+02
*->lnrPhGvavdpsdGrvy<-*
+ +G+av+ ++G+++
F21F3.1 113 IGQVSGLAVN-KNGHIV 128
eRF1_3: domain 1 of 1, from 163 to 173: score 5.7, E = 4.4
*->iiqEkklieeF<-*
i++Ekk+i+eF
F21F3.1 163 ISREKKVIDEF 173
NHL: domain 2 of 4, from 178 to 205: score 39.4, E = 1.9e-09
*->lnrPhGvavdpsdGrvyVaDsenhrvqvf<-*
+++PhG+++d ++G+ +V+D+++h+v+++
F21F3.1 178 FYMPHGLTID-NNGDYWVTDVGSHQVHKI 205
NHL: domain 3 of 4, from 229 to 257: score 40.6, E = 8.7e-10
*->lnrPhGvavdpsdGrvyVaD.senhrvqvf<-*
++ P++vav ++G+++VaD+++n+r+ +f
F21F3.1 229 FCKPTDVAVA-KNGHIFVADgYCNSRILKF 257
NHL: domain 4 of 4, from 279 to 307: score 27.7, E = 4.5e-06
*->lnrPhGvavdpsdGrvyVaDsenhrvqvf<-*
+ Ph++ + ++ + v+VaD+en rvq+f
F21F3.1 279 FVVPHSLSLIEDMNIVCVADRENQRVQCF 307
Pep_deformylase: domain 1 of 1, from 385 to 403: score 2.8, E = 8.6
*->nGvlFyDRisplkplaike<-*
+Gv+F++ + p+ l+i++
F21F3.1 385 DGVMFVSQLEPSRILEIRL 403