hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm2/seq/F21F3.3
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Query:  F21F3.3  CE09533   protein-S isoprenylsysteine O-methyltransferase status:Partially_confirmed TR:P91266 protein_id:AAB42280.1

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N
--------    -----------                                 -----    ------- ---
ICMT        Isoprenylcysteine carboxyl methyltransfer   435.3   5.3e-127   1
voltage_CLC Voltage gated chloride channel                2.7        8.4   1
Pox_P35     Poxvirus P35 protein                          1.9        9.7   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
Pox_P35       1/1      49    59 ..   331   341 .]     1.9      9.7
voltage_CLC   1/1      49    71 ..   433   455 .]     2.7      8.4
ICMT          1/1      74   289 ..    13   247 .]   435.3 5.3e-127

Alignments of top-scoring domains:
Pox_P35: domain 1 of 1, from 49 to 59: score 1.9, E = 9.7
                   *->FLaGaLvTyIi<-*
                      FL+G+L++ I+
     F21F3.3    49    FLVGLLASVIV    59

voltage_CLC: domain 1 of 1, from 49 to 71: score 2.7, E = 8.4
                   *->nlsvilPlmvAvliaklvadslg<-*
                      +l  +l+  +++l+a++v++s+
     F21F3.3    49    FLVGLLASVIVLLVAYAVGESCE    71

ICMT: domain 1 of 1, from 74 to 289: score 435.3, E = 5.3e-127
                   *->lyqiamtaafLGcvfGvglllSfsHeqivlkhfgwyflfLSLFHflE
                      + qi+m+aafLGc+++v l + ++He++ ++ f+ yflfLS FHf+E
     F21F3.3    74    NNQILMPAAFLGCAVAVNLVYTVAHEGELWEYFSRYFLFLSVFHFSE 120

                   yyiTAlnNprsLslDSFLLNhskeYwlAalvswlEfLiEaGksFAkvinC
                   +++TAl+N+r+L +DSFLL hs +YwlAa+++w+EfLiEa
     F21F3.3   121 FVFTALTNRRTLGPDSFLLKHSFGYWLAASIGWIEFLIEA---------- 160

                   lfFPeidLkqitwSLAtkllsvlGlllvilGeylRkvAMvtAGssFsHiV
                    f+Pei++   +w      +   G+ ++i+Ge+ Rkv+Mv+AG++F+H
     F21F3.3   161 NFYPEIKMYSVLW------I---GTFGCIIGEIVRKVGMVHAGLAFTHLM 201

                   ankKssdHtLVtdGvYAylRHPSYvGwFyWAiGTQvLLcNPiclVvyalV
                   a +K+s HtL+ +G+YAy+RHP+Y+GwF+WA++TQ+ LcNPi+ V+y++V
     F21F3.3   202 ARTKRSGHTLINTGIYAYMRHPGYFGWFIWAVSTQIVLCNPISFVIYTFV 251

                   lWkFFsdRIeeEEkyLIsFFGdsYlEYkkkVptGiPFI<-*
                   +W+FF+ RIe EEk+LIsFFGd+Y EY++k ++G+PF
     F21F3.3   252 TWRFFANRIEIEEKDLISFFGDDYAEYQRKTWSGVPFA    289

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