Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F22B3.1
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Query: F22B3.1 CE03252 histone H4 status:Partially_confirmed SW:P02306 protein_id:CAA92734.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
histone Core histone H2A/H2B/H3/H4 46.8 4.6e-12 1
CBFD_NFYB_HMF Histone-like transcription factor (CBF/ 16.7 0.013 1
TAF TATA box binding protein associated fac 14.4 0.00025 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
TAF 1/1 66 92 .. 41 68 .] 14.4 0.00025
CBFD_NFYB_HMF 1/1 70 94 .. 43 67 .] 16.7 0.013
histone 1/1 2 97 .. 1 117 [] 46.8 4.6e-12
Alignments of top-scoring domains:
TAF: domain 1 of 1, from 66 to 92: score 14.4, E = 0.00025
*->ivQeAiKFMrHsKRtkLTvsDidsAqLk<-*
++ +A+ H+KR + T+ D+ +A Lk
F22B3.1 66 VIRDAVTYCEHAKRKTVTAMDVVYA-LK 92
CBFD_NFYB_HMF: domain 1 of 1, from 70 to 94: score 16.7, E = 0.013
*->AveickhekRKTikaEDIllAlesL<-*
Av c+h+kRKT++a D+ Al++
F22B3.1 70 AVTYCEHAKRKTVTAMDVVYALKRQ 94
histone: domain 1 of 1, from 2 to 97: score 46.8, E = 4.6e-12
*->agkkgagkk.....kkrsrsrkaglqfyvgRvlkqlhpdtgissrag
+g++++gk+ +++++kr+r k l+ d +++++++
F22B3.1 2 SGRGKGGKGlgkggAKRHR--------------KVLR-DNIQGITKP 33
aiansyvadvlErlaaEaleLagnakkdtKkkRitpreiqlAvrldlele
ai+ +++++++++ +++g ++++t +++ +++l+ +++++++
F22B3.1 34 AIR-RLARRGGVK------RISGLIYEET----RGVLKVFLENVIRDAVT 72
lakhAvtegtkaVtpniskrllgkk<-*
+++hA++++++a++++++++++g +
F22B3.1 73 YCEHAKRKTVTAMDVVYALKRQGRT 97