hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm2/seq/F22B5.2
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Query:  F22B5.2  CE02197   RNA binding protein status:Confirmed SW:Q19706 protein_id:CAA90354.1

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N
--------        -----------                             -----    ------- ---
rrm             RNA recognition motif. (a.k.a. RRM, R    94.0    3.2e-26   1
tRNA_synt_1c_R1 Glutaminyl-tRNA synthetase, non-speci     5.0       0.49   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
tRNA_synt_1c_R1   1/1     187   200 ..     1    14 [.     5.0     0.49
rrm               1/1     178   249 ..     1    77 []    94.0  3.2e-26

Alignments of top-scoring domains:
tRNA_synt_1c_R1: domain 1 of 1, from 187 to 200: score 5.0, E = 0.49
                   *->sakeeLlaLFsqiG<-*
                      ++ +eL+ LF +iG
     F22B5.2   187    MNEDELRDLFGKIG    200

rrm: domain 1 of 1, from 178 to 249: score 94.0, E = 3.2e-26
                   *->lfVgNLppdvteedLkdlFskfGpivsikivkDhiekpketgkskGf
                      + V+NLp++++e++L+dlF+k+G++ +i i +D     k+tg +kGf
     F22B5.2   178    CRVTNLPQEMNEDELRDLFGKIGRVIRIFIARD-----KVTGLPKGF 219

                   aFVeFeseedAekAlealnGkelggrklrv<-*
                   aFV+Fes +dA++A+++ln +  +  +l+v
     F22B5.2   220 AFVTFESRDDAARAIAELNDIRMYHMVLKV    249

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